View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_40 (Length: 218)
Name: NF1804_low_40
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_40 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 7514230 - 7514013
Alignment:
| Q |
1 |
atctacacaatttacacagaaacaatcaatttcaatttcaacattaatatacaaaattcatctcaaaaactgttcggatcgagcagcattttctcacctc |
100 |
Q |
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| T |
7514230 |
atctacacaatttacacagaaacaatcaatttcaatttcaacattaattcacaaaattcatctcaaaaactgttcggatcgagcagcattttctcacctc |
7514131 |
T |
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| Q |
101 |
gaacttcattctcaagccgattaagctcaaccttcactggatccgaaccgtgcaacagattcatgaactcatcagcatccatactcggttgcctcgcgga |
200 |
Q |
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| T |
7514130 |
gaacttcattctcaagccgattaagctcaaccttcactggatccgaaccgtgcaacagattcatgaactcatcagcatccatactcggttgcctcgcgga |
7514031 |
T |
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| Q |
201 |
gccgcgtctccgagaaga |
218 |
Q |
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| T |
7514030 |
gccgcgtctccgagaaga |
7514013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 44452869 - 44452775
Alignment:
| Q |
87 |
cattttctcacctcgaacttcattctcaagccgattaagctcaaccttcactggatccgaaccgtgcaacagattcatgaactcatcagcatcca |
181 |
Q |
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| T |
44452869 |
cattttcacacctctaacatcattctcaagtcgattaagctccaatttcactggatcggaaccatgaagcaagttcatgaactcatccgcatcca |
44452775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 11571306 - 11571148
Alignment:
| Q |
53 |
aaaattcatctcaaaaactgttcggatcgagcagcattttctcacctcgaacttcattctcaagccgattaagctcaaccttcactggatccgaaccgtg |
152 |
Q |
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| T |
11571306 |
aaaattcagctgaaaaactcttcggatcgagcaacattttcacacctcgaacttcattctcaagccgattaagctccactttcactggatccgaaccgtg |
11571207 |
T |
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| Q |
153 |
caacagattcatgaactcatcagcatccatactcggttgcctcgcggagccgcgtctcc |
211 |
Q |
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| T |
11571206 |
caacaaattcatgaactcatcagcatccatactctgctgtctagcagaaccgcgtctcc |
11571148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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