View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_5 (Length: 534)
Name: NF1804_low_5
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 274 - 517
Target Start/End: Original strand, 10158266 - 10158509
Alignment:
| Q |
274 |
cctgaacatatttgatagagttccttttcccaagctcgagaatcctatcacaataagcaacaaaaacctctccaatcccctccctctccaaatcagacaa |
373 |
Q |
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| T |
10158266 |
cctgaacatatttgatagagttccttttcccaagctcgagaatcctatcacaataagcaacaaaaacctctccaatcccctccctctccaaatcagacaa |
10158365 |
T |
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| Q |
374 |
caccacatcatgatccggagtttcaataacaacatcatgaaatccaaacccatccaacaccgaacttgcagacccagtttcatcaactaggtctgcaagt |
473 |
Q |
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| T |
10158366 |
caccacatcatgatccggagtttcaataacaacatcatgaaatccaaacccatccaacaccgaacttgcagacccagtttcatcaactgggtctgcaagt |
10158465 |
T |
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| Q |
474 |
tcgcgtgatagagcaggataaagattctcaataacccgaatctt |
517 |
Q |
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| T |
10158466 |
tcgcgtgatagagcaggataaagattctcaataacccgaatctt |
10158509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 10158028 - 10158198
Alignment:
| Q |
28 |
acatgtgtcggtaccagacaccgaacacacctttacacctttgatcaaaagtgtaggtgatgaagagctagtatcacaccaaatagaatnnnnnnnncta |
127 |
Q |
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| T |
10158028 |
acatgtgtcggtaccagacaccgaacacaccttt--------gatcaaaagtgtaggtgatgaagagctagtatcacaccaaatagaataaaaaacacta |
10158119 |
T |
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| Q |
128 |
cacttaatcttacaatattcaaaatgagtaaatcaacttctctcaagtctaaaccatacagttttcattcaattttctc |
206 |
Q |
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| T |
10158120 |
cacttaatcttacaatattcaaaatgagtaaatcaacttctctcaagtcgaaaccatacagttttcattcaattttctc |
10158198 |
T |
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