View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_6 (Length: 516)
Name: NF1804_low_6
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 5933187 - 5932662
Alignment:
| Q |
1 |
cctctcaaagatagcttctcaggtaaacgtttaagggttaaaactctaaacctgcactataaatactaatccatagacactaggtcaggtatcctcactt |
100 |
Q |
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| T |
5933187 |
cctctcaaagatagcttctcaggtaaacgtctaagggtcaaaactctaaacctgcactataaatactaatccatagacactaggttaggtatcctcactt |
5933088 |
T |
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| Q |
101 |
ttacccctaaaacgcctatcattccaaggcactta--------acactagatgtgtgtgcaggtacaccacccccattcgcccggagaaaaaggttgtta |
192 |
Q |
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| T |
5933087 |
ttacccctaaaacgcctatcattccaaggcacttactgacttaacactagatgtgtgtgcaggtacaccacccccattcgcccagagaaaaaggttgtta |
5932988 |
T |
|
| Q |
193 |
ttgatggaagtacaccaccccca-----------------ttcacttgggaactaacctcagaacaaacattttcattcctttttcaaagacaaatccca |
275 |
Q |
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| T |
5932987 |
ttgatggaagtaccctactcaaaggctattcaatggcgacttcacttgggaactaacctcagaacaaacattttcattcctttttcaaagacaaatccca |
5932888 |
T |
|
| Q |
276 |
tggttaatacttgtttaaattttcgtcaagcatcagaccattggtacccttcaccacaaaacaaaccagaaatcaaaatacctatttattcaccaaatac |
375 |
Q |
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| T |
5932887 |
tgtttaatacttgtttaaattttcgtcaagcatcagaccattggtacccttcaccacaaaacaaaccagaaa-caaaatacctatttattcaccaaatac |
5932789 |
T |
|
| Q |
376 |
cccctcagtggaaaacccgttcaaaagtcgtgtcgtatatatgatgggatccatctccaacctcttaggagtatacgaccctacgacaatttctaccttc |
475 |
Q |
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| T |
5932788 |
cccctcagtggaaaacccgttcaacagtcgtgtcgtatatatgatgggatccatctccaacctcttaggagtatacgaccctacgacaatttctaccttc |
5932689 |
T |
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| Q |
476 |
aatcgggttgaagccctaatttccctt |
502 |
Q |
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| T |
5932688 |
aatcgggttgaagccctaatttccctt |
5932662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 25692339 - 25692378
Alignment:
| Q |
147 |
gtgtgcaggtacaccacccccattcgcccggagaaaaagg |
186 |
Q |
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| T |
25692339 |
gtgtgcaggtacaccaccctcattcgcccggagaaaaagg |
25692378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 25692231 - 25692308
Alignment:
| Q |
46 |
ctaaacctgcactataaatactaatccatagacactaggtcaggtatcctcacttttacccctaaaacgcctatcattc |
124 |
Q |
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| T |
25692231 |
ctaaacctactctataaatactaacccatggacactgggttaggtacgctcactttta-ccctaaaatacctatcattc |
25692308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 41808671 - 41808639
Alignment:
| Q |
232 |
cctcagaacaaacattttcattcctttttcaaa |
264 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
41808671 |
cctcagaacaaacatttgcattcctttttcaaa |
41808639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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