View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_8 (Length: 420)
Name: NF1804_low_8
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 9 - 402
Target Start/End: Complemental strand, 43503696 - 43503303
Alignment:
| Q |
9 |
gagatgaagtcactgcgctatctagatgcgcactttaatgaactacatgggcttcctattgcaatcgggaaattgactagtcttgaatttctaaacctga |
108 |
Q |
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| T |
43503696 |
gagatgaagtcactgcgctatctagatgcgcactttaatgaactacatgggcttcctattgcaatcgggaaattgactagtcttgaatttctaaacctga |
43503597 |
T |
|
| Q |
109 |
gtagtaacttcagcgatcttcaagaaataccagagacatttggtgatctgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcc |
208 |
Q |
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| T |
43503596 |
gtagtaacttcagcgatcttcaagaaataccagagacatttggtgatttgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcc |
43503497 |
T |
|
| Q |
209 |
tgatacatttggccgccttgatagtttaatcaagctaaacttagagcagaaccctattgaattgccacctatggagactgtaaatgaaggtgtccaagcc |
308 |
Q |
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| T |
43503496 |
tgatacatttggccgccttgatagtttaatcaagctaaacttagagcagaaccctattgaattgccacctatggagattgtaaatgaaggtgtccaagcc |
43503397 |
T |
|
| Q |
309 |
atcaagtcttacatggccaagaggtggattgacatattggcagaggaagagaggaaaaagacacatgaatcggaagaacaaggacagagtggtt |
402 |
Q |
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| T |
43503396 |
atcaagtcttacatggccaagaggtggattgatatattggcagaggaagagaggaaaaagacacatgaatcggaagaacaaggacagagtggtt |
43503303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 45 - 358
Target Start/End: Complemental strand, 34564544 - 34564231
Alignment:
| Q |
45 |
aatgaactacatgggcttcctattgcaatcgggaaattgactagtcttgaatttctaaacctgagtagtaacttcagcgatcttcaagaaataccagaga |
144 |
Q |
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| T |
34564544 |
aatgagctacatgggcttccagcagcatttgggagactgactactctggaaattctcaacttgagcagtaatttcgctgatcttaaagaacttccagaga |
34564445 |
T |
|
| Q |
145 |
catttggtgatctgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcctgatacatttggccgccttgatagtttaatcaagct |
244 |
Q |
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||||||| || ||| || ||||||||||||||| | || || ||||| |||||||||||||| ||||||||||| ||||||||| ||| | |||||| |
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| T |
34564444 |
catttggcgaattgactaatctcaaggaattggatgtcagtaataatcagattcatgcacttccagatacatttggttgccttgataatttgaccaagct |
34564345 |
T |
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| Q |
245 |
aaacttagagcagaaccctattgaattgccacctatggagactgtaaatgaaggtgtccaagccatcaagtcttacatggccaagaggtggattgacata |
344 |
Q |
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| T |
34564344 |
caacttggaacagaatcctcttgaactgccaccagtggagattgtaaaccaaggggtccaagccataaaaacttttatggccaagaggtggattgctatg |
34564245 |
T |
|
| Q |
345 |
ttggcagaggaaga |
358 |
Q |
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|||| ||||||||| |
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| T |
34564244 |
ttggaagaggaaga |
34564231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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