View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18050_high_1 (Length: 721)

Name: NF18050_high_1
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18050_high_1
NF18050_high_1
[»] chr7 (1 HSPs)
chr7 (38-721)||(41440616-41441301)


Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 38 - 721
Target Start/End: Original strand, 41440616 - 41441301
Alignment:
Q  38 gccacactgtttctgtaagttggaaaatgcaatgccacccaatgggggcatcacttcatttatttgctctcttaaaggactaaggagagagaagaagcta 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41440616 gccacactgtttctgtaagttggaaaatgcaatgccacccaatgggggcatcacttcatttatttgctctcttaaaggactaaggagagagaagaagcta 41440715  T
Q  138 aaacgaaagcaaccgtctacaccttttttgcttcttaaacaaaaaagtattcagaagtactactatggtttcaatcaaagaggaaaataaattgnnnnnn 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  41440716 aaacgaaagcaaccgtctacaccttttttgcttcttaaacaaaaaagtattcagaagtactactatggtttcaatcaaagaggaaaataaattgaaaaaa 41440815  T
Q  238 nnggattaatcaatcattcagaaaaatgttgattacaataaaggattaagactttcctcnnnnnnnnnnnnnnnnnn--ggattaagattggttagaagt 335  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||    
T  41440816 a-ggattaatcaatcattcagaaaaatgttgattacaataaaggattaagactttcctcaaaaaacaaaaaaaaataaaggattaagattggttagaagt 41440914  T
Q  336 tcgatcattgactctgtacgaagaaaattcggttgaaaatgaagagcacacattgtgtattcacatactctt-acatagactaatcgtgttaaataatga 434  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  41440915 tcgatcattgactctgtacgaagaaaatttggttgaaaatggagagcacacattgtgtatttacatactcttgacatagactaatcgtgttaaataatga 41441014  T
Q  435 tagaaattttgtaccatggtnnnnnnnnntacactttatataatgattatattctaactaaagtaaataatcacaacaaagataaccggccatttggtaa 534  Q
    ||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41441015 tagaaattttgtaccatggtaaaaaaaa-tacactttatataatgattatattctaactaaagtaaataatcacaacaaagataaccggccatttgataa 41441113  T
Q  535 cttacttcaaccaacaatactaatatttatcgttttaagatgtaaataaacttcaactaattctaacatttagaataggagtgacaaacatgagtaaggt 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  41441114 cttacttcaaccaacaatactaatatttatcgttttaagatgtaaataaacttcaactaattctaacgtttagaataggagtgacaaacataagtaaggt 41441213  T
Q  635 ctaggagga-tatatcaattactattgaaagttaataatggaatttattattaccaatttcaaaattttagacttcagcataatttgt 721  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  41441214 ctaggaggactatatcaattactattgaaagttaataatggaatttattattaccaatttagaaattttagacttcagcataatttgt 41441301  T

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