View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_high_13 (Length: 366)
Name: NF18050_high_13
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 45166251 - 45165921
Alignment:
| Q |
17 |
caaagggatgagagagtgtagaacatctgttataagtggcctgtaacttggttcagcttgcacacatagcacagccactgcagctacctgtagagtagaa |
116 |
Q |
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| T |
45166251 |
caaagggatgagagagtgtagaacatctgttataagtggcctataacttggttcagcttgcacacatagcacagccactgcagctacctgtagagtagaa |
45166152 |
T |
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| Q |
117 |
tgttgagatgaattaagaagtactagcatttaacactcagcattaaaacatgtgattacagtacttctattcaatgaacctgatataaatgcttcaaatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45166151 |
tgttgagatgaattaagaagtactagcatttaacactcagcattaaaacatgtgattacagtacttctattcaatgaacctgatataaatgcttcaaatc |
45166052 |
T |
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| Q |
217 |
cattgtattttggataacaggatctagaatacttggaagctttgatctgtcggttagctgaggcatggcctacatattgaatttgaaagtcttaaaccat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45166051 |
cattgtattttggataacaggatctagaatacttggaagctttgatctgtcggttagctgaggcatggcctacatattgaatttgaaagtcttaaaccat |
45165952 |
T |
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| Q |
317 |
aaagtacagcaaaacttaaattttcatccat |
347 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
45165951 |
aaagtacagcaaaacttaaattttcatccat |
45165921 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 49120978 - 49121063
Alignment:
| Q |
20 |
agggatgagagagtgtagaacatctgttataagtggcctgtaacttggttcagcttgcacacatagcacagccactgcagctacct |
105 |
Q |
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| T |
49120978 |
agggacgagggagtgaagaacatctgtgattagtggccggtaacttggctctggttgcacacatagcacagctaccgcagcaacct |
49121063 |
T |
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