View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_high_16 (Length: 290)
Name: NF18050_high_16
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 50712532 - 50712308
Alignment:
| Q |
1 |
cgtaaaagatgagggtctagaggtccctatatcacagggtgctgaaggtaaagtttcaggaaatgtacttgctggtgacaaaaattcagtttcatattca |
100 |
Q |
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| T |
50712532 |
cgtaaaagatgagggtctagaggtccctatatcacaaggtgctgaaggtaaagtttcaggaaatgtacttgctggtgacaaaaattcactttcatattca |
50712433 |
T |
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| Q |
101 |
aggactccagaagaaatattgaggatagtgtatggtcgatatgaaattgttcctggtggcttctttcctaagggagcagatggtcgtatagctaagtgtc |
200 |
Q |
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| T |
50712432 |
aggactccagaagaaatattgaggatagtgtatggtcgatatgaaattgttcctggtggcttctttcctaagggagcagatggtcgtatagctaagtgtc |
50712333 |
T |
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| Q |
201 |
tagtagctacttctataggttaaga |
225 |
Q |
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| T |
50712332 |
tagtagctacttctataggttaaga |
50712308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 12783859 - 12783971
Alignment:
| Q |
83 |
aattcagtttcatattcaaggactccagaagaaatattgaggatagtgtatgg---tcgatatgaaattgttcctggtggcttctttcctaagggagcag |
179 |
Q |
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| T |
12783859 |
aattcactatcatatccaaggactccacaagaaatattgaggattatatatggaagtggtaatgagagtgtccctggtggcttctaccctaagggagcag |
12783958 |
T |
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| Q |
180 |
atggtcgtatagc |
192 |
Q |
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| T |
12783959 |
atggtcgtatagc |
12783971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 12771958 - 12772025
Alignment:
| Q |
56 |
tcaggaaatgtacttgctggtgacaaaaattcagtttcatattcaaggactccagaagaaatattgag |
123 |
Q |
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| T |
12771958 |
tcaggaaatatccttgctggtgataaaaattcactatcatattcaagaactccaaatgaaatattgag |
12772025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 12762584 - 12762618
Alignment:
| Q |
92 |
tcatattcaaggactccagaagaaatattgaggat |
126 |
Q |
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| T |
12762584 |
tcatattcaaggactccacaagaaatattgaggat |
12762618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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