View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18050_high_4 (Length: 510)

Name: NF18050_high_4
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18050_high_4
NF18050_high_4
[»] chr3 (5 HSPs)
chr3 (10-457)||(43201685-43202135)
chr3 (16-204)||(28592604-28592792)
chr3 (96-208)||(13477077-13477189)
chr3 (102-207)||(51469206-51469311)
chr3 (180-208)||(37987253-37987281)
[»] chr7 (2 HSPs)
chr7 (10-208)||(48717312-48717507)
chr7 (156-208)||(48718172-48718224)
[»] chr8 (2 HSPs)
chr8 (61-213)||(14753938-14754086)
chr8 (96-197)||(3043273-3043374)
[»] scaffold0022 (1 HSPs)
scaffold0022 (78-160)||(148442-148523)
[»] chr4 (2 HSPs)
chr4 (78-160)||(12919653-12919734)
chr4 (180-208)||(40496081-40496109)
[»] chr1 (2 HSPs)
chr1 (75-199)||(25084536-25084659)
chr1 (181-209)||(37576942-37576970)
[»] chr5 (2 HSPs)
chr5 (97-208)||(33470400-33470511)
chr5 (383-415)||(36233394-36233426)
[»] chr2 (1 HSPs)
chr2 (137-184)||(45632494-45632541)
[»] scaffold0418 (1 HSPs)
scaffold0418 (180-208)||(5925-5953)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Complemental strand, 43202135 - 43201685
Alignment:
Q  10 gtagcaaagggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaaga---tgagagcagcgatatgttttt 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||   |||||||||||||||||||||    
T  43202135 gtagcaaatggatgatcaattatgtaatttgtctgcaagaagaacataaacgtgaatcccttcaagaagaagaagaagatgagagcagcgatatgttttt 43202036  T
Q  107 ctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatccattgaca 206  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| || |||| || ||||||||||||||||| ||||||||||||| ||||||||||||    
T  43202035 ctttgaagagtcctcacataaacaattagctgaataaatgagagtcactaagtttaaaataaaggacggctatgatttggtgtcaacaaatccattgaca 43201936  T
Q  207 ccgagtgacccaaactcttaatatattaacacaaacatactcaatttattggtattgataatatatagatttagaagtacagaaagagtgccaaaaaggt 306  Q
    |||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43201935 ccgaatgatcctaactcctaatatattaacacaaacatactcaatttattggtattgataatatatatatttagaagtacagaaagagtgccaaaaaggt 43201836  T
Q  307 agacctgtcctccagctacctcaataagaagcaagaaccacatgcatggatgcaattgaatcagaaaactattaagaaagtcaatcacatttaagaactc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43201835 agacctgtcctccagctacctcaataagaagcaagaaccacatgcatggatgcaattgaatcagaaaactattaagaaagtcaatcacatttaagaactc 43201736  T
Q  407 acacgtgagtaactactcattgagctggcatttatacctcacaaacaaata 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43201735 acacgtgagtaactactcattgagctggcatttatacctcacaaacaaata 43201685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 28592604 - 28592792
Alignment:
Q  16 aagggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaagatgagagcagcg------atatgtttttctt 109  Q
    ||||||||||| ||| |||||||||||||    ||||||||||||||||||| ||||||||||||||   |||||||| ||      ||||| |||||||    
T  28592604 aagggatgatcgattgtgtaatttgtctg----aagaacataaacatgagtcacttcaagaagaaga---tgagagcaacgtggtatatatgcttttctt 28592696  T
Q  110 tgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtc-aacgaatccattga 204  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||| ||||||||||||||    
T  28592697 tgaagagtccccacgtgaacaattagctgaataaatgagagccattaagattaaaataaatgacggttatgatttggtgtcaaacgaatccattga 28592792  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 13477189 - 13477077
Alignment:
Q  96 gatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacga 195  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||||  |||||||| | || ||  |||||||||||| ||    
T  13477189 gatatgtttttctttgaagagtccccacattaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggttaggatttggtgtcaatga 13477090  T
Q  196 atccattgacacc 208  Q
    || | ||||||||    
T  13477089 attcgttgacacc 13477077  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 51469206 - 51469311
Alignment:
Q  102 tttttctttgaagagtccccacatgaacaa-ttagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatcca 200  Q
    |||||||||||||||| ||||| ||||||| || || ||||||||| |||||||||||||| ||| |||| | |||||  |||||||||||||||||||     
T  51469206 tttttctttgaagagttcccacgtgaacaagttcgc-gaataaatgtgagccattaagattaaaacaaagaatggctaagatttggtgtcaacgaatccg 51469304  T
Q  201 ttgacac 207  Q
    |||||||    
T  51469305 ttgacac 51469311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 37987281 - 37987253
Alignment:
Q  180 aatttggtgtcaacgaatccattgacacc 208  Q
    |||||||||||||||||||||||||||||    
T  37987281 aatttggtgtcaacgaatccattgacacc 37987253  T

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Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 48717507 - 48717312
Alignment:
Q  10 gtagcaaagggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaagatgagagcagcgatatgtttttctt 109  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||    
T  48717507 gtagcaaatggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaaga---tgagaacagcgatatgtttttctt 48717411  T
Q  110 tgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatccattgacacc 208  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| | |||||||||||||| |||||||||||    
T  48717410 tcaagagtccccacatgaacaattagctgaataaatgagagccactaagattaaaatgaaggacggctatgagttggtgtcaacgaacccattgacacc 48717312  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 48718172 - 48718224
Alignment:
Q  156 aagattgaaataaaggacggctataatttggtgtcaacgaatccattgacacc 208  Q
    |||||| ||||||| ||||||||| |||||||||||||| |||||||||||||    
T  48718172 aagattaaaataaacgacggctatgatttggtgtcaacggatccattgacacc 48718224  T

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Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 14753938 - 14754086
Alignment:
Q  61 atgagtcccttcaagaagaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat 160  Q
    |||||| ||||||||||||||| || ||| ||||   |||||||||||||||||||||||||| ||||||| |   |||||||||| |||||||||||||    
T  14753938 atgagtgccttcaagaagaagatga-gagggcag---tatgtttttctttgaagagtccccacgtgaacaaattcgtgaataaatgtgagccattaagat 14754033  T
Q  161 tgaaataaaggacggctataatttggtgtcaacgaatccattgacaccgagtg 213  Q
    | ||| |||| |||||||  |||| |||||||| ||||| |||||||| ||||    
T  14754034 taaaacaaagaacggctaggatttagtgtcaacaaatccgttgacacctagtg 14754086  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 3043374 - 3043273
Alignment:
Q  96 gatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacga 195  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||||  |||||||| | || ||  |||||||||||| ||    
T  3043374 gatatgtttttctttgaagagtccccacattaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggttaggatttggtgtcaatga 3043275  T
Q  196 at 197  Q
    ||    
T  3043274 at 3043273  T

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Target: scaffold0022 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 148523 - 148442
Alignment:
Q  78 gaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat 160  Q
    ||||||||||||||  | |||||||||||||||||||||||||||| |||||||| |  |||||||||| |||||||||||||    
T  148523 gaagaagatgagagt-gtgatatgtttttctttgaagagtccccacctgaacaatcaagtgaataaatgtgagccattaagat 148442  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 12919734 - 12919653
Alignment:
Q  78 gaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat 160  Q
    ||||||||||||||  | |||||||||||||||||||||||||||| | || |||||  |||||||||| || ||||||||||    
T  12919734 gaagaagatgagagt-gtgatatgtttttctttgaagagtccccacgttaataattaattgaataaatgtgaaccattaagat 12919653  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 40496081 - 40496109
Alignment:
Q  180 aatttggtgtcaacgaatccattgacacc 208  Q
    |||||||||||||||||||||||||||||    
T  40496081 aatttggtgtcaacgaatccattgacacc 40496109  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 25084659 - 25084536
Alignment:
Q  75 gaagaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacg 174  Q
    |||||||||||||||||  | |||||||||||||||||||||||| ||| | |||||| |  | |||||||| | |||||||||||  ||| |||| | |    
T  25084659 gaagaagaagatgagagt-gtgatatgtttttctttgaagagtccacaccttaacaatcaagtaaataaatgtgggccattaagatcaaaacaaagaatg 25084561  T
Q  175 gctataatttggtgtcaacgaatcc 199  Q
    | ||  |||||||||||||| ||||    
T  25084560 gttaggatttggtgtcaacggatcc 25084536  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 37576970 - 37576942
Alignment:
Q  181 atttggtgtcaacgaatccattgacaccg 209  Q
    |||||||||||||||||||||||||||||    
T  37576970 atttggtgtcaacgaatccattgacaccg 37576942  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 33470511 - 33470400
Alignment:
Q  97 atatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaa 196  Q
    |||||||||||||| ||||||| |||  | ||||||||  |||||||||| |||||||||||||  |||||||| | || |   ||||||||||||| ||    
T  33470511 atatgtttttctttaaagagtctccatgttaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggtttggatttggtgtcaacaaa 33470412  T
Q  197 tccattgacacc 208  Q
    | | ||||||||    
T  33470411 ttcgttgacacc 33470400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 36233426 - 36233394
Alignment:
Q  383 aaagtcaatcacatttaagaactcacacgtgag 415  Q
    |||||||| ||||||||||||||||||||||||    
T  36233426 aaagtcaaacacatttaagaactcacacgtgag 36233394  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 45632541 - 45632494
Alignment:
Q  137 tgaataaatgagagccattaagattgaaataaaggacggctataattt 184  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||| ||||    
T  45632541 tgaataaatgatagccactaagattaaaataaaggacggctatgattt 45632494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 5953 - 5925
Alignment:
Q  180 aatttggtgtcaacgaatccattgacacc 208  Q
    |||||||||||||||||||||||||||||    
T  5953 aatttggtgtcaacgaatccattgacacc 5925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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