View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_high_6 (Length: 491)
Name: NF18050_high_6
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 350
Target Start/End: Complemental strand, 41180665 - 41180324
Alignment:
| Q |
21 |
caagcaggagcagtcaatactagagcaaaacttcatgcagttgagccatctgactctcatcttccaaggaattccatgtgggaaagaagttagttcacaa |
120 |
Q |
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| T |
41180665 |
caagcatgagcagtcaatactagagcaaaacttcatgcaattgagccatctggctctcatcttccaaggaatttcatgtgggaaagaagttagttcacaa |
41180566 |
T |
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| Q |
121 |
gagtataaaga--ataagcactcttacagaaaaatctatgaaaatagtagacgctttgattaggagaatgactgatttgatgtgtctactagaaagtaac |
218 |
Q |
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| T |
41180565 |
gagtataaagaatataagcgctcttacagaaaaatctatgaagatagtagacgctttgattaggagaatgactgatttgatgtgtctactagaaagtaac |
41180466 |
T |
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| Q |
219 |
t----------tagggaaacaaaattaaacacttaagaatattaaactttgatatacggataaagttagatcg-aaaatgaggtaggcattatagtgaac |
307 |
Q |
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| T |
41180465 |
tgggtggatgaaagggaaacaaaattaaacagtt-agagcattaaactttgatatatggataaagttagatcgaaaaataatgtgggcattatagttgac |
41180367 |
T |
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| Q |
308 |
aaagagcagaagagacatatttactgcatttatgtacattata |
350 |
Q |
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| T |
41180366 |
aaagagtagaagaaacatatttactgtatttatgtacattata |
41180324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 41180192 - 41180131
Alignment:
| Q |
349 |
tatatgtttgtgttgtggtcgaaaacaaacaaacaaaatctagctaatatacaactaccggc |
410 |
Q |
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| T |
41180192 |
tatatgtttgtgttgtggtccaaaacaaacaaacaaaatctagctaatatacaactaccggc |
41180131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 12180084 - 12180036
Alignment:
| Q |
42 |
agagcaaaacttcatgcagttgagccatctgactctcatcttccaagga |
90 |
Q |
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| T |
12180084 |
agagcaaaactttaagcaattgaaccatctggctctcatcttccaagga |
12180036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 12181660 - 12181612
Alignment:
| Q |
42 |
agagcaaaacttcatgcagttgagccatctgactctcatcttccaagga |
90 |
Q |
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| T |
12181660 |
agagcaaaactttaagcaattgaaccatctggctctcatcttccaagga |
12181612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 14232624 - 14232576
Alignment:
| Q |
42 |
agagcaaaacttcatgcagttgagccatctgactctcatcttccaagga |
90 |
Q |
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|||||||||||| | ||| |||| ||||||| ||||||||||||||||| |
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| T |
14232624 |
agagcaaaactttaagcaattgaaccatctggctctcatcttccaagga |
14232576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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