View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_10 (Length: 472)
Name: NF18050_low_10
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_10 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 73 - 462
Target Start/End: Original strand, 20599591 - 20599980
Alignment:
| Q |
73 |
tatcatcacctgttactactatagatgatacaacttctggttttgtgaatgccatggatggtcagagacaatttggaagaggtagaggaaatggttttca |
172 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
20599591 |
tatcatcacctgttactactatagatgatatagcttctggttttgtgaatgccatggatggtcagagacaatttggtataggtagaggaaatggttttca |
20599690 |
T |
|
| Q |
173 |
aggaagaggaagagggactctcagagtgtgtagtttctgtaatagaactaatcacattgtggaaacttgttataagaaacatggttaccctcctaattgg |
272 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20599691 |
aggaagaggaagagggaatctcagagtgtgtagtttctgtaatagaactaatcacactgtgaaaacttgttataagaaacatggttaccctcctaattgg |
20599790 |
T |
|
| Q |
273 |
ggaagaggaggaggaaattcttttgctaatgctaattttgtggaaagtgaagaaactgagctcaagggaaatgcttccactaggaaaaatgatgaaaatg |
372 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20599791 |
ggaagaggaggaggaaattcttttgctaatgctaattttgtggaaagtgaagaaactgagctcaagggaaatgcttccactgggaaaaatgatgaaaatg |
20599890 |
T |
|
| Q |
373 |
gaatgatgctgaccaaagatcagtatcagaatttgattgcatttttggagaaaagaaacattgaagctaaaggctctgcaaatgtgatga |
462 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20599891 |
gaataatgctaaccaaagatcagtatcagaatttgattgcattgttggagaaaagcaacattgaagctaaaggctctgcaaatgtgatga |
20599980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 135 - 294
Target Start/End: Complemental strand, 4695767 - 4695605
Alignment:
| Q |
135 |
cagagacaatttggaagaggtagaggaaatg---gttttcaaggaagaggaagagggactctcagagtgtgtagtttctgtaatagaactaatcacattg |
231 |
Q |
| |
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||||| |||||||||||||| |||||||||| |||| ||||||||||||||||| | | ||||| |||| ||||||| || | ||||||| |
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| T |
4695767 |
cagaggcaatttggaagaggaagaggaaatgctggtttccaaggaagaggaagaggcaatggaagagtttgtaatttctgtggaaggtcaaatcacacca |
4695668 |
T |
|
| Q |
232 |
tggaaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattctt |
294 |
Q |
| |
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|||| |||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||| |
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| T |
4695667 |
tggagacttgttataagaagcatggctttcctcctaattggggtagaggaggaggaaattctt |
4695605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 20594122 - 20594163
Alignment:
| Q |
25 |
ttttctctatggtaatgcagcaagaaacgaagacgcagtaca |
66 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||| |||| |
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|
| T |
20594122 |
ttttctctatggtaatgcagcaagaaaggaagatgcaataca |
20594163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 25 - 462
Target Start/End: Complemental strand, 5154485 - 5154052
Alignment:
| Q |
25 |
ttttctctatggtaatgcagcaagaaacgaagacgcagtacagtgtcgtatcatcacctgttactactatagatgatacaacttctggttttgtgaatgc |
124 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| | ||| ||||| |||||| ||| |||||||||||||||||| |||| |||| ||||| |
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|
| T |
5154485 |
ttttctctatggtaatgcagcaagaaagaaagatgcagtaaaatgtagtatcttcacct---actcctatagatgatacaacttgtggtcttgttaatgc |
5154389 |
T |
|
| Q |
125 |
catggatggtcagagacaatttggaagaggtagaggaaatggttttcaaggaagaggaagagggactctcagagtgtgtagtttctgtaatagaactaat |
224 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||||| | |||||| || ||||| ||||| |||||||| ||| |
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| T |
5154388 |
catggatggtcagaggcaatttggaaggggtagaggaaattcatttcaaggaataggaagagcaaatctcagggtatgtagcttctgcaatagaaccaat |
5154289 |
T |
|
| Q |
225 |
cacattgtggaaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattcttttgctaatgctaattttgtggaaagtgaag |
324 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
5154288 |
cacattttggaacct-gttataagaaacatggttatcctcctaattggggaagaggaggaggaaattcttttgctaatgctaattttgtggaatgtgaag |
5154190 |
T |
|
| Q |
325 |
aaactgagctcaagggaaatgcttccactaggaaaaatgatgaaaatggaatgatgctgaccaaagatcagtatcagaatttgattgcatttttggagaa |
424 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| | |||||||| |
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| T |
5154189 |
atactgagctcaagggaagcacttccattgggaaaaatgatgaaaatgaaatgatgctaaccaaagaccagtatcagaatttgattgcactgttggagaa |
5154090 |
T |
|
| Q |
425 |
aagaaacattgaagctaaaggctctgcaaatgtgatga |
462 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||| |
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|
| T |
5154089 |
aagcaacattgaagctaaaggctctgcaaatgtgatga |
5154052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 130 - 302
Target Start/End: Original strand, 22841837 - 22842012
Alignment:
| Q |
130 |
atggtcagagacaatttggaagaggtagaggaaatgg---ttttcaaggaagaggaagagggactctcagagtgtgtagtttctgtaatagaactaatca |
226 |
Q |
| |
|
||||||| | ||| ||||| ||||||||||||||||| || |||||||||||||||||| | | ||| | |||| || ||| | ||||||||||| |
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| T |
22841837 |
atggtcaaaaacagtttggcagaggtagaggaaatgggtcttctcaaggaagaggaagaggtaatggaagattttgtaccttttgtgaaagaactaatca |
22841936 |
T |
|
| Q |
227 |
cattgtggaaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattcttttgctaat |
302 |
Q |
| |
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|| |||||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| | ||||||| |
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| T |
22841937 |
cacagtggaaacttgttacaagaagcatggataccctccaaactggggaagaggtggaggaaattcctatgctaat |
22842012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 25 - 454
Target Start/End: Complemental strand, 31233820 - 31233391
Alignment:
| Q |
25 |
ttttctctatggtaatgcagcaagaaacgaagacgcagtacagtgtcgtatcatcacctgttactactatagatgatacaacttctggttttgtgaatgc |
124 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| |||||| | ||| ||||||||||| || || | | ||||||||||||||| || || ||||| |
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|
| T |
31233820 |
ttttctctatggttatgcagcaagaaagaaagatgcagtataatgtagtatcatcaccaactatctctttgggtgatacaacttctggcttagttaatgc |
31233721 |
T |
|
| Q |
125 |
catggatggtcagagacaatttggaagaggtagaggaaatggttttcaaggaagaggaagagggactctcagagtgtgtagtttctgtaatagaactaat |
224 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||| | || || |||||||||||||||||||||||||||| |
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|
| T |
31233720 |
catggatggtcagaggcaatttggaagaggtagaagaaattcatttcaaggaagaggaggaggaaatcccatagtgtgtagtttctgtaatagaactaat |
31233621 |
T |
|
| Q |
225 |
cacattgtggaaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattcttttgctaatgctaattttgtggaaagtgaag |
324 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||| | |||||||||||| |||||||| |||||||||||||| |||||||| |||||||| |||||| |
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|
| T |
31233620 |
cacacagttgaaacatgttacaagaaacatggttagcttcctaattggggcagaggaggtggaaattcttttgcaaatgctaactttgtggattgtgaag |
31233521 |
T |
|
| Q |
325 |
aaactgagctcaagggaaatgcttccactaggaaaaatgatgaaaatggaatgatgctgaccaaagatcagtatcagaatttgattgcatttttggagaa |
424 |
Q |
| |
|
| ||| || |||| |||| || |||||||||||||| |||||||||||| || || ||||||||||| |||||||||||||| ||||| | |
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|
| T |
31233520 |
atgttgaatctaaaggaagcacttctgctgggaaaaatgatgaaggtggaatgatgctaactaaggatcagtatcaaaatttgattgcattattggaaag |
31233421 |
T |
|
| Q |
425 |
aagaaacattgaagctaaaggctctgcaaa |
454 |
Q |
| |
|
||| || ||||||||||||| || ||||| |
|
|
| T |
31233420 |
aagcaatgttgaagctaaaggttcagcaaa |
31233391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 302
Target Start/End: Original strand, 14233343 - 14233518
Alignment:
| Q |
130 |
atggtcagagacaatttggaagaggtagaggaaatggtttt---caaggaagaggaagagggactctcagagtgtgtagtttctgtaatagaactaatca |
226 |
Q |
| |
|
||||||| | ||| ||||| ||||||||||||||||| ||| ||||||||||||||||| | | ||| | |||| || ||| | ||||||||||| |
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|
| T |
14233343 |
atggtcaaaaacagtttggcagaggtagaggaaatgggttttctcaaggaagaggaagaggtaatggaagattttgtaccttttgtgaaagaactaatca |
14233442 |
T |
|
| Q |
227 |
cattgtggaaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattcttttgctaat |
302 |
Q |
| |
|
|| ||||| |||||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| | ||||||| |
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|
| T |
14233443 |
cacagtggatacttgttacaagaagcatggataccctccaaactggggaagaggtggaggaaattcctatgctaat |
14233518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 294
Target Start/End: Original strand, 3136 - 3298
Alignment:
| Q |
135 |
cagagacaatttggaagaggtagaggaaatg---gttttcaaggaagaggaagagggactctcagagtgtgtagtttctgtaatagaactaatcacattg |
231 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||| ||||||||||||||||| | | ||||| |||| ||||||| || | ||||||| |
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|
| T |
3136 |
cagaggcaatttggaagaggaagaggaaatgctggtttccaaggaagaggaagaggcaatggaagagtttgtaatttctgtggaaggtcaaatcacacca |
3235 |
T |
|
| Q |
232 |
tggaaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattctt |
294 |
Q |
| |
|
|||| |||||||||||||| ||||| | |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
3236 |
tggagacttgttataagaagcatggctttcctcctaattggggtagaggaggaggtaattctt |
3298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 37175328 - 37175416
Alignment:
| Q |
206 |
tttctgtaatagaactaatcacattgtggaaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattctt |
294 |
Q |
| |
|
||||||| | ||||| ||||| | ||| |||||||||||||| || |||||||| || || ||||||||||||||||| |||||||||| |
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|
| T |
37175328 |
tttctgtgaaagaacaaatcatactgttgaaacttgttataaaaagcatggttatccaccaaattggggaagaggaggtggaaattctt |
37175416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 294
Target Start/End: Complemental strand, 23418891 - 23418729
Alignment:
| Q |
135 |
cagagacaatttggaagaggtagaggaaatg---gttttcaaggaagaggaagagggactctcagagtgtgtagtttctgtaatagaactaatcacattg |
231 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||| ||||||||||||||||| | ||||| |||| ||||||| || | ||||||| |
|
|
| T |
23418891 |
cagaggcaatttggaagaggaagaggaaatgctggtttccaaggaagaggaagaggcaacggaagagtttgtaatttctgtggaaggtcaaatcacacca |
23418792 |
T |
|
| Q |
232 |
tggaaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattctt |
294 |
Q |
| |
|
|||| |||||||||||||| ||||| | |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
23418791 |
tggagacttgttataagaagcatggctttcctcctaattggggtagaggaggaggtaattctt |
23418729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 48156343 - 48156285
Alignment:
| Q |
25 |
ttttctctatggtaatgcagcaagaaacgaagacgcagtacagtgtcgtatcatcacct |
83 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||| |
|
|
| T |
48156343 |
ttttctctatggtaatgcagcaagaaagaaagatacagtacaatgtagtatcatcacct |
48156285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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