View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18050_low_11 (Length: 459)

Name: NF18050_low_11
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18050_low_11
NF18050_low_11
[»] chr3 (24 HSPs)
chr3 (8-442)||(32400362-32400796)
chr3 (353-424)||(21479104-21479178)
chr3 (348-424)||(55401061-55401140)
chr3 (348-423)||(10954939-10955017)
chr3 (347-426)||(16000009-16000091)
chr3 (347-437)||(25775481-25775575)
chr3 (350-424)||(8587017-8587094)
chr3 (389-426)||(14829674-14829711)
chr3 (348-424)||(20503451-20503530)
chr3 (349-424)||(10268481-10268559)
chr3 (354-421)||(28917990-28918060)
chr3 (389-424)||(3865594-3865629)
chr3 (357-423)||(4987294-4987363)
chr3 (389-424)||(10318072-10318107)
chr3 (389-424)||(14747547-14747582)
chr3 (354-440)||(34910288-34910376)
chr3 (389-424)||(40052318-40052353)
chr3 (389-443)||(21305212-21305266)
chr3 (357-426)||(26508094-26508166)
chr3 (388-426)||(33359745-33359783)
chr3 (389-426)||(3610617-3610654)
chr3 (354-426)||(41961650-41961725)
chr3 (349-409)||(51206348-51206411)
chr3 (354-409)||(1509540-1509598)
[»] chr1 (22 HSPs)
chr1 (315-426)||(41877432-41877545)
chr1 (315-442)||(24334664-24334797)
chr1 (313-424)||(48450548-48450660)
chr1 (315-419)||(19058823-19058924)
chr1 (348-424)||(22881610-22881689)
chr1 (348-424)||(46348377-46348456)
chr1 (348-423)||(38078655-38078733)
chr1 (348-424)||(22515881-22515960)
chr1 (348-424)||(31672889-31672968)
chr1 (348-440)||(37598802-37598896)
chr1 (376-424)||(18556481-18556529)
chr1 (315-418)||(21378570-21378676)
chr1 (354-420)||(113289-113358)
chr1 (350-424)||(5927336-5927413)
chr1 (354-424)||(6612171-6612244)
chr1 (350-424)||(42359445-42359522)
chr1 (349-424)||(9103626-9103703)
chr1 (389-426)||(5944265-5944302)
chr1 (389-426)||(14359559-14359596)
chr1 (354-421)||(1486709-1486779)
chr1 (392-424)||(6427336-6427368)
chr1 (389-421)||(40917740-40917772)
[»] chr6 (23 HSPs)
chr6 (315-424)||(426478-426587)
chr6 (349-421)||(7977825-7977900)
chr6 (348-424)||(17841583-17841662)
chr6 (354-424)||(10770674-10770747)
chr6 (354-424)||(12696310-12696383)
chr6 (354-424)||(16766683-16766756)
chr6 (348-424)||(28152085-28152163)
chr6 (348-424)||(34595120-34595199)
chr6 (354-424)||(8365519-8365592)
chr6 (348-424)||(6898275-6898354)
chr6 (348-424)||(8776967-8777046)
chr6 (349-424)||(7265588-7265666)
chr6 (349-424)||(7938102-7938180)
chr6 (389-424)||(3398605-3398640)
chr6 (354-424)||(9107370-9107443)
chr6 (356-426)||(16833292-16833365)
chr6 (353-442)||(7801155-7801247)
chr6 (348-409)||(28715296-28715360)
chr6 (352-420)||(853857-853928)
chr6 (389-438)||(24645452-24645501)
chr6 (360-423)||(1681745-1681811)
chr6 (389-421)||(21424840-21424872)
chr6 (348-419)||(33001283-33001357)
[»] chr5 (17 HSPs)
chr5 (315-442)||(8419995-8420122)
chr5 (348-423)||(6247609-6247687)
chr5 (349-424)||(21191051-21191129)
chr5 (348-423)||(21576739-21576817)
chr5 (350-423)||(24906297-24906373)
chr5 (354-424)||(31084309-31084382)
chr5 (359-424)||(14674255-14674323)
chr5 (349-421)||(33178014-33178089)
chr5 (376-424)||(22013400-22013448)
chr5 (389-424)||(17177061-17177096)
chr5 (354-424)||(21522736-21522809)
chr5 (354-424)||(21533302-21533375)
chr5 (354-424)||(39698527-39698600)
chr5 (354-426)||(21542014-21542089)
chr5 (354-426)||(41633719-41633794)
chr5 (392-424)||(17123034-17123066)
chr5 (349-424)||(42893346-42893424)
[»] chr4 (13 HSPs)
chr4 (350-426)||(21945487-21945566)
chr4 (354-437)||(11596352-11596438)
chr4 (348-424)||(2361969-2362048)
chr4 (348-424)||(23292980-23293059)
chr4 (354-426)||(19482652-19482727)
chr4 (354-424)||(30298932-30299006)
chr4 (354-424)||(30327800-30327874)
chr4 (348-424)||(49431011-49431091)
chr4 (389-442)||(50280851-50280902)
chr4 (348-424)||(12797332-12797410)
chr4 (389-430)||(24543961-24544002)
chr4 (348-412)||(29205442-29205509)
chr4 (348-419)||(12895268-12895342)
[»] chr2 (15 HSPs)
chr2 (351-424)||(37558963-37559039)
chr2 (348-424)||(15972859-15972938)
chr2 (348-424)||(18841007-18841086)
chr2 (315-424)||(19536361-19536471)
chr2 (347-426)||(21624250-21624333)
chr2 (316-409)||(18255945-18256038)
chr2 (349-424)||(38117154-38117232)
chr2 (348-424)||(6940241-6940320)
chr2 (348-424)||(30404844-30404923)
chr2 (361-424)||(21374706-21374772)
chr2 (354-424)||(20539674-20539747)
chr2 (389-424)||(27460012-27460047)
chr2 (348-409)||(2438713-2438777)
chr2 (349-424)||(18421949-18422027)
chr2 (313-345)||(30717457-30717489)
[»] scaffold0053 (1 HSPs)
scaffold0053 (348-424)||(8784-8863)
[»] chr8 (19 HSPs)
chr8 (348-424)||(20873055-20873134)
chr8 (354-424)||(22651962-22652035)
chr8 (348-422)||(24613509-24613585)
chr8 (322-376)||(30271224-30271277)
chr8 (389-426)||(22197780-22197817)
chr8 (351-423)||(22595981-22596056)
chr8 (352-424)||(30077385-30077460)
chr8 (348-424)||(36450748-36450827)
chr8 (389-424)||(13437002-13437037)
chr8 (354-424)||(15816129-15816202)
chr8 (350-424)||(18170478-18170555)
chr8 (350-424)||(18634046-18634123)
chr8 (389-424)||(25192385-25192420)
chr8 (389-424)||(29510342-29510377)
chr8 (389-426)||(4673463-4673500)
chr8 (389-430)||(30271329-30271370)
chr8 (355-426)||(4298887-4298961)
chr8 (348-403)||(4948659-4948717)
chr8 (354-409)||(25566842-25566900)
[»] chr7 (13 HSPs)
chr7 (348-424)||(25481888-25481967)
chr7 (315-424)||(27945027-27945137)
chr7 (349-440)||(7197292-7197385)
chr7 (354-437)||(9408334-9408420)
chr7 (354-424)||(24339628-24339701)
chr7 (347-424)||(11061069-11061149)
chr7 (349-417)||(28155563-28155634)
chr7 (353-424)||(24105664-24105738)
chr7 (389-424)||(8478967-8479002)
chr7 (354-424)||(13770677-13770750)
chr7 (355-423)||(7438693-7438764)
chr7 (348-424)||(15680795-15680874)
chr7 (348-404)||(21880158-21880217)
[»] scaffold0027 (1 HSPs)
scaffold0027 (315-424)||(46668-46776)
[»] scaffold0652 (1 HSPs)
scaffold0652 (348-424)||(456-535)
[»] scaffold0722 (1 HSPs)
scaffold0722 (349-424)||(7027-7105)
[»] scaffold0223 (1 HSPs)
scaffold0223 (354-424)||(20158-20231)
[»] scaffold0103 (1 HSPs)
scaffold0103 (389-424)||(51797-51832)
[»] scaffold0050 (1 HSPs)
scaffold0050 (348-442)||(70247-70343)
[»] scaffold0019 (1 HSPs)
scaffold0019 (389-424)||(71709-71744)
[»] scaffold0003 (1 HSPs)
scaffold0003 (354-424)||(241580-241653)
[»] scaffold0004 (2 HSPs)
scaffold0004 (389-423)||(123612-123646)
scaffold0004 (361-424)||(92793-92859)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Original strand, 32400362 - 32400796
Alignment:
Q  8 cgaagaatatactcttcaataaccacccaaattttctctcaacttcatgctccaagagtaggtgctcatctggtcatgcaacataatagagcagttcatt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32400362 cgaaaaatatactcttcaataaccacccaaattttctctcaacttcatgctccaagagtaggtgctcatctggtcatgcaacataatagagcagttcatt 32400461  T
Q  108 cacacaacacaacgaaaccaaaatcatttagagttcaacttctttgcgtgttatagttccatgttttgacataatgaatgagaagcactgacacagacga 207  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32400462 cacacaacataatgaaaccaaaatcatttagagttcaacttctttgcgtgttatagttccatgttttgacataatgaatgagaagcactgacacagacga 32400561  T
Q  208 caaattcaccggccacaacactgacacaggtaatataggaaaatgacaagtgaatgtaatcgcacgcatgtgccggcatatcaatgccggacattgacac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32400562 caaattcaccggccacaacactgacacaggtaatataggaaaatgacaagtgaatgtaatcgcacgcatgtgccggcatatcaatgccggacattgacac 32400661  T
Q  308 gtgtcagctatgaagcacggacactccttgggttaggcaacgtgtccgacaccgacactagtaattacaaattacgtaatcttttcaaattattagctgt 407  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||    
T  32400662 gtgtcagctatgaagcaaggacactccttgggttaggcaacgtgtccgacacggacacttgtaattacaaattatgtaatcttttcaaattattagctgt 32400761  T
Q  408 gttggcgtgtcagtgtctggtgttcgtgtccgtat 442  Q
    || | |||||||||||| |||||||||||||||||    
T  32400762 gtcgccgtgtcagtgtccggtgttcgtgtccgtat 32400796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 21479178 - 21479104
Alignment:
Q  353 ccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||||||   ||||  || || ||||||||||||||||||||| ||||||||||||||    
T  21479178 ccgacaccgacactagtaattacactgaattgtgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 21479104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 55401140 - 55401061
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| |||||||||   ||||| || || ||||||||||||||| ||||| ||||| ||||||||    
T  55401140 cgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtc 55401061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 10955017 - 10954939
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgt 423  Q
    ||||||||||||||||||| || ||||||   ||||| || || ||||||||||||||| ||||| |||||||||||||    
T  10955017 cgtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgt 10954939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 426
Target Start/End: Original strand, 16000009 - 16000091
Alignment:
Q  347 acgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    |||||||||||||||||||| ||| |||||   ||||| || || |||| |||||||||| ||||| ||||||||||||||||    
T  16000009 acgtgtccgacaccgacacttgtagttacactgaattatgttatttttttaaattattagttgtgtcggcgtgtcagtgtctg 16000091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 437
Target Start/End: Complemental strand, 25775575 - 25775481
Alignment:
Q  347 acgtgtccgacaccgacactagtaattaca---aattacgtaatc-ttttcaaattattagctgtgttggcgtgtcagtgtctggtgttcgtgtc 437  Q
    |||||||||||||||||||| |||||||||   ||||| || ||  ||||||||||||||  ||||||||||||||||||||  |||| ||||||    
T  25775575 acgtgtccgacaccgacacttgtaattacactgaattatgtgattattttcaaattattaaatgtgttggcgtgtcagtgtccagtgtccgtgtc 25775481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 8587017 - 8587094
Alignment:
Q  350 tgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||| |||||||||   ||||| || || ||||||||||| ||| ||||| ||||||||||||||    
T  8587017 tgtccgacaccgacacttgtaattacacttaattatgtgattttttcaaattactagatgtgtcggcgtgtcagtgtc 8587094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 426
Target Start/End: Complemental strand, 14829711 - 14829674
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  14829711 ttttcaaattattagctgtgtcggcgtgtcagtgtctg 14829674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 20503530 - 20503451
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||| ||||||||||| |||||||||   ||||| || || ||||||||||||| | ||||| ||||||||||||||    
T  20503530 cgtgtccaacaccgacacttgtaattacactgaattatgtcattttttcaaattatttgttgtgtcggcgtgtcagtgtc 20503451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 10268481 - 10268559
Alignment:
Q  349 gtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||| ||||| |||||| |||||||||   ||||| || || |||||||||||||| |||||| ||||||||||||||    
T  10268481 gtgtctgacactgacacttgtaattacactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtc 10268559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 28918060 - 28917990
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagt 421  Q
    ||||||||||||| |||||||||   ||||| || || ||||||||||||||||| ||| |||||||||||    
T  28918060 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctatgtcggcgtgtcagt 28917990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 3865594 - 3865629
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3865594 ttttcaaattattagctgtgtcggcgtgtcagtgtc 3865629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 423
Target Start/End: Original strand, 4987294 - 4987363
Alignment:
Q  357 caccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgt 423  Q
    |||| ||||| |||||||||   ||||| || || ||||||||||||||||||||| |||||||||||||    
T  4987294 caccaacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 4987363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 10318072 - 10318107
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10318072 ttttcaaattattagctgtgtcggcgtgtcagtgtc 10318107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Complemental strand, 14747582 - 14747547
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||| ||||||||||||||    
T  14747582 ttttcaaattattagctgtgtcggcgtgtcagtgtc 14747547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 440
Target Start/End: Complemental strand, 34910376 - 34910288
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctggtgttcgtgtccgt 440  Q
    |||||||||| || |||||||||   ||||| || || ||||||||||||||| ||||| |||||||| ||||||||||| ||| |||||    
T  34910376 cgacaccgactcttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtc-gtgtctggtgtccgtatccgt 34910288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Complemental strand, 40052353 - 40052318
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40052353 ttttcaaattattagctgtgtcggcgtgtcagtgtc 40052318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 443
Target Start/End: Complemental strand, 21305266 - 21305212
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtctggtgttcgtgtccgtatt 443  Q
    |||||||||||||||  |||| ||||||| |||||||||||| |||||| |||||    
T  21305266 ttttcaaattattagaggtgtcggcgtgttagtgtctggtgtccgtgtctgtatt 21305212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 426
Target Start/End: Complemental strand, 26508166 - 26508094
Alignment:
Q  357 caccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    |||||||||| |||||||||   ||||| || || |||||||||||||||||||||  |||||||||| ||||    
T  26508166 caccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatctg 26508094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 33359783 - 33359745
Alignment:
Q  388 cttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  33359783 cttttcaaattattagctgtgtcagcgtgtcagtgtctg 33359745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Complemental strand, 3610654 - 3610617
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  3610654 tttttaaattattaactgtgttggcgtgtcagtgtctg 3610617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 426
Target Start/End: Original strand, 41961650 - 41961725
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    ||||||||||||| |||||||||   ||| | || || ||||||||||||||| ||||  ||||||||||||||||    
T  41961650 cgacaccgacacttgtaattacaccgaataatgtgatattttcaaattattagttgtgacggcgtgtcagtgtctg 41961725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 51206348 - 51206411
Alignment:
Q  349 gtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgt 409  Q
    |||||||||||||||||| ||| |||||   ||||| || || |||||||||||||||||||||    
T  51206348 gtgtccgacaccgacacttgtatttacactgaattatgtgattttttcaaattattagctgtgt 51206411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 1509598 - 1509540
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgt 409  Q
    ||||||||||||| |||||||||   ||||| || || |||||||||||||||||||||    
T  1509598 cgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgt 1509540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 315 - 426
Target Start/End: Original strand, 41877432 - 41877545
Alignment:
Q  315 ctatgaagcacggacactccttgggttaggcaacgtgtccgacaccgacactagtaattac---aaattacgtaatcttttcaaattattagctgtgttg 411  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||||   |||||| ||||| || ||||||||||||| |||| |    
T  41877432 ctatgaagcacggccactcctcgggttaggca-cgtgtccgacaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtgtcg 41877530  T
Q  412 gcgtgtcagtgtctg 426  Q
    ||||  |||||||||    
T  41877531 gcgtaccagtgtctg 41877545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 442
Target Start/End: Original strand, 24334664 - 24334797
Alignment:
Q  315 ctatgaagcacggacactccttgggttaggca--acgtgtccgacaccgacactagtaattaca---aattacgta-atcttttcaaattattagctgtg 408  Q
    |||||||||||||||||| ||||| ||||||   |||||||||||||||||||| |||||||||   ||||| | |  | ||||||||| ||||||||||    
T  24334664 ctatgaagcacggacactacttggattaggcgtgacgtgtccgacaccgacacttgtaattacactgaattatgcattttttttcaaatgattagctgtg 24334763  T
Q  409 ttggcgtgtcagtgtctggtgttcgtgtccgtat 442  Q
    | || ||||| ||||| ||||| |||||||||||    
T  24334764 tcggtgtgtccgtgtccggtgtccgtgtccgtat 24334797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 424
Target Start/End: Original strand, 48450548 - 48450660
Alignment:
Q  313 agctatgaagcacggacactccttgggttaggcaacgtgtcc-gacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtg 408  Q
    ||||||||||||||||||||||| || ||||   |||||||| |   |||||||| |||||||||   ||||| || || ||||||||||||||||||||    
T  48450548 agctatgaagcacggacactcctcggattag---acgtgtcctgtgtccgacacttgtaattacactaaattatgttattttttcaaattattagctgtg 48450644  T
Q  409 ttggcgtgtcagtgtc 424  Q
    ||||||||||||||||    
T  48450645 ttggcgtgtcagtgtc 48450660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 419
Target Start/End: Original strand, 19058823 - 19058924
Alignment:
Q  315 ctatgaagcacggacactccttgggttaggcaacgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttg 411  Q
    |||||| ||||||||||||||||| |      |||||||||||||||||||| |||||||||   ||||| || ||||||| |||||||||||||||| |    
T  19058823 ctatgatgcacggacactccttggat------acgtgtccgacaccgacacttgtaattacactgaattatgttatctttttaaattattagctgtgtcg 19058916  T
Q  412 gcgtgtca 419  Q
    ||||||||    
T  19058917 gcgtgtca 19058924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 22881610 - 22881689
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| |||||||||   ||||| || || ||||||||||||||| ||||| ||||||||||||||    
T  22881610 cgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 22881689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 46348377 - 46348456
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| |||||||||   |||||  | || ||||||||||||||||||||| ||||||||||||||    
T  46348377 cgtgtccgacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 46348456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 423
Target Start/End: Original strand, 38078655 - 38078733
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgt 423  Q
    ||||||||||||||||||| |||||||||   ||||| || || ||||||||||||||||||||| | |||||||||||    
T  38078655 cgtgtccgacaccgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgt 38078733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 22515881 - 22515960
Alignment:
Q  348 cgtgtccgacaccgacactagtaattac---aaattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| ||||||||   |||||| || || |||||||||||||||||||||  ||||||| |||||    
T  22515881 cgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtctgcgtgtccgtgtc 22515960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 31672889 - 31672968
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||| ||| |||||||||   ||||| || || ||||||||||||||||||||| || |||||||||||    
T  31672889 cgtgtccgacaccgagacttgtaattacactgaattaagtgattttttcaaattattagctgtgtcggtgtgtcagtgtc 31672968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 440
Target Start/End: Complemental strand, 37598896 - 37598802
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctggtgttcgtgtccgt 440  Q
    |||||||||||||||||||  ||||||||   ||||  || || ||||||||||||||| ||||| |||||||||||||| |||||  ||||||||    
T  37598896 cgtgtccgacaccgacacttataattacactgaattt-gtgattttttcaaattattagttgtgtcggcgtgtcagtgtccggtgtctgtgtccgt 37598802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 424
Target Start/End: Original strand, 18556481 - 18556529
Alignment:
Q  376 aaattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||| || || ||||||||||||||||||||| ||||||||||||||    
T  18556481 aaattatgtgatattttcaaattattagctgtgtcggcgtgtcagtgtc 18556529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 418
Target Start/End: Complemental strand, 21378676 - 21378570
Alignment:
Q  315 ctatgaagcacggacactccttgggttaggcaacgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttg 411  Q
    ||||||||||||||| |||| ||| |||| |   || ||| ||||||||||| |||||||||   ||||| ||||| ||||||| ||||||||||||| |    
T  21378676 ctatgaagcacggacgctccatggattagccgtagtatccaacaccgacacttgtaattacactgaattatgtaattttttcaatttattagctgtgtcg 21378577  T
Q  412 gcgtgtc 418  Q
    | |||||    
T  21378576 gtgtgtc 21378570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 113358 - 113289
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcag 420  Q
    ||||||| ||||| |||||||||   ||||| || || ||||||||||||||||||||| ||||||||||    
T  113358 cgacacctacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcag 113289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 5927336 - 5927413
Alignment:
Q  350 tgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||| |||||| |||||||||   |||||  | || |||||||||||||||| ||||| |||||||||||||    
T  5927336 tgtccgacactgacacttgtaattacattaaattatatgattttttcaaattattagcagtgttagcgtgtcagtgtc 5927413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 6612171 - 6612244
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| |||||||||   ||||| ||||| |||||||||||||| |||| | ||||||||| ||||    
T  6612171 cgacaccgacacttgtaattacactgaattatgtaattttttcaaattattaactgtatcggcgtgtcattgtc 6612244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 42359445 - 42359522
Alignment:
Q  350 tgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||| |||||||||   ||||  || || ||||||||||||||| |||||  |||||||||||||    
T  42359445 tgtccgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagatgtgtcagcgtgtcagtgtc 42359522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 9103703 - 9103626
Alignment:
Q  349 gtgtccgacaccgacactagtaattac--aaattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||||||||| ||| | |   |||||| || || |||||||||||||| |||||| ||||||||||||||    
T  9103703 gtgtccgacaccgacacttgtattaaactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtc 9103626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Complemental strand, 5944302 - 5944265
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  5944302 ttttcaaattattagctgtggcggcgtgtcagtgtctg 5944265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 14359559 - 14359596
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  14359559 ttttcaaattattagctgtgtcggcgtgtccgtgtctg 14359596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 421
Target Start/End: Original strand, 1486709 - 1486779
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagt 421  Q
    |||||||||||||  ||||||||   ||||| || || |||||||||||||||||||||  ||||||||||    
T  1486709 cgacaccgacacttataattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagt 1486779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 424
Target Start/End: Complemental strand, 6427368 - 6427336
Alignment:
Q  392 tcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| |||||||||||||||||||    
T  6427368 tcaaattattagcggtgttggcgtgtcagtgtc 6427336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 421
Target Start/End: Complemental strand, 40917772 - 40917740
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagt 421  Q
    ||||||||||||||||||||| |||||||||||    
T  40917772 ttttcaaattattagctgtgtcggcgtgtcagt 40917740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 424
Target Start/End: Original strand, 426478 - 426587
Alignment:
Q  315 ctatgaagcacggacactccttgggttaggcaacgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttg 411  Q
    |||||||||||||||||||||  | ||||||   |||||||||||||||||| |||||||||   ||||| || || |||||||||||||| |||||| |    
T  426478 ctatgaagcacggacactcctcagattaggc---gtgtccgacaccgacacttgtaattacatttaattatgtgattttttcaaattattaactgtgtcg 426574  T
Q  412 gcgtgtcagtgtc 424  Q
    |||||||||||||    
T  426575 gcgtgtcagtgtc 426587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 7977825 - 7977900
Alignment:
Q  349 gtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagt 421  Q
    |||||||||||||||||| |||||||||   ||||| ||||| ||||||||||||||||||||| |||||||||||    
T  7977825 gtgtccgacaccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagt 7977900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 17841583 - 17841662
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||||| |||| |||||||||   ||||| || || ||||||||||||||||||||| ||||||||||||||    
T  17841583 cgtgtccgacaccgtcacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 17841662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 10770674 - 10770747
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| |||||||||   ||||| || || ||||||||||||||| ||||||||||||||||||||    
T  10770674 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtc 10770747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 12696383 - 12696310
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||| |||||| |||||||||   ||||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  12696383 cgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtc 12696310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 16766756 - 16766683
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| |||||||||   ||||| || || ||||||||||||||||||||| ||||||||||||||    
T  16766756 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 16766683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 28152163 - 28152085
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| |||||||||   ||||| || || ||||||||||||||||| ||| ||||||||||||||    
T  28152163 cgtgtccgacaccgacacttgtaattacactgaattatgtgat-ttttcaaattattagctttgtcggcgtgtcagtgtc 28152085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 34595199 - 34595120
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| |||||||||   ||||| || || ||||||||||||||| ||||| ||||||||| ||||    
T  34595199 cgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtc 34595120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 8365519 - 8365592
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| |||||||||   ||||| || || ||||||||||||||| ||||| ||||||||||||||    
T  8365519 cgacaccgacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtc 8365592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 6898275 - 6898354
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| |||||||||   ||||| ||||| | |||||||||||||  ||||  |||||||||||||    
T  6898275 cgtgtccgacaccgacacttgtaattacacttaattatgtaatttgttcaaattattagacgtgtcagcgtgtcagtgtc 6898354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 8776967 - 8777046
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| ||||| |||||||||   ||||  || || ||||||||||||||| ||||| ||||||||||||||    
T  8776967 cgtgtccgacaccaacacttgtaattacactgaattttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 8777046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 7265588 - 7265666
Alignment:
Q  349 gtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||||||||   ||||||||   ||||| || || || ||||||||||||| |||||||||||||||||||    
T  7265588 gtgtccgacaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 7265666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 7938180 - 7938102
Alignment:
Q  349 gtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||| ||||||||||||  ||||||||   |||||  | || ||||||||||||||||||||| ||||||||||||||    
T  7938180 gtgtcggacaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 7938102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Complemental strand, 3398640 - 3398605
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3398640 ttttcaaattattagctgtgtcggcgtgtcagtgtc 3398605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 9107370 - 9107443
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| |||||||||   ||||  || || ||||||||||||||||||||| ||||||| ||||||    
T  9107370 cgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgtc 9107443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 16833365 - 16833292
Alignment:
Q  356 acaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    ||||||||||| |||||||||   || || || || ||||||||||||||| ||||| ||||||||||||||||    
T  16833365 acaccgacacttgtaattacactgaagtatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtctg 16833292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 442
Target Start/End: Original strand, 7801155 - 7801247
Alignment:
Q  353 ccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctggtgttcgtgtccgtat 442  Q
    |||||||||||||| ||||||||    ||||| || || ||||||||||||||| ||||| ||||||| |||||  ||| | |||||||||||    
T  7801155 ccgacaccgacacttgtaattacgctgaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgttcggtatccgtgtccgtat 7801247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 28715360 - 28715296
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgt 409  Q
    ||||||||||||||||||| |||||||||   ||||| || || |||||||||||||||| ||||    
T  28715360 cgtgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaattattagccgtgt 28715296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 853857 - 853928
Alignment:
Q  352 tccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcag 420  Q
    ||||||||||||||| |||||| ||   ||||| || || ||||||||||||||| ||||| ||||||||||    
T  853857 tccgacaccgacacttgtaattgcacttaattatgtgattttttcaaattattagttgtgtcggcgtgtcag 853928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 24645501 - 24645452
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtctggtgttcgtgtcc 438  Q
    ||||||||||||||||||||| | | |||||||||||| |||| ||||||    
T  24645501 ttttcaaattattagctgtgtcgacatgtcagtgtctgatgtttgtgtcc 24645452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 423
Target Start/End: Complemental strand, 1681811 - 1681745
Alignment:
Q  360 cgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgt 423  Q
    ||||||| |||||||||   |||||||| || ||||||||||||||| ||||| ||||||| |||||    
T  1681811 cgacacttgtaattacactgaattacgtgattttttcaaattattagttgtgtcggcgtgttagtgt 1681745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 421
Target Start/End: Original strand, 21424840 - 21424872
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagt 421  Q
    |||||||||||||||| ||||||||||||||||    
T  21424840 ttttcaaattattagcggtgttggcgtgtcagt 21424872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 419
Target Start/End: Original strand, 33001283 - 33001357
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtca 419  Q
    ||||||||||||||||||   ||||||||   ||||| || || |||||||||||||||| |||| |||||||||    
T  33001283 cgtgtccgacaccgacacatataattacatttaattatgtgattttttcaaattattagcagtgtcggcgtgtca 33001357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 8420122 - 8419995
Alignment:
Q  315 ctatgaagcacggacactccttgggttaggcaacgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttg 411  Q
    |||||||||||||| |||||| |  ||||||   | |||||||||||||||| |||||||||   ||||| || || ||||||||||||||||| ||| |    
T  8420122 ctatgaagcacggatactcctcgaattaggc---gcgtccgacaccgacacttgtaattacattgaattatgttattttttcaaattattagctatgtcg 8420026  T
Q  412 gcgtgtcagtgtctggtgttcgtgtccgtat 442  Q
    |||||||| |||| ||||| |||||||||||    
T  8420025 gcgtgtcattgtccggtgtccgtgtccgtat 8419995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 6247687 - 6247609
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgt 423  Q
    ||||||||||||||||||| |||||||||   ||||| || || ||||||||||||||| ||||| |||||||||||||    
T  6247687 cgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagatgtgtcggcgtgtcagtgt 6247609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 21191051 - 21191129
Alignment:
Q  349 gtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||||||||| |||||||||   ||||| || || ||||||||||||||||||||| ||| ||||||||||    
T  21191051 gtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtc 21191129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 423
Target Start/End: Original strand, 21576739 - 21576817
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgt 423  Q
    ||||||||||| ||||||| |||||||||   ||||| || || ||||||||||||||||||||||||||| |||||||    
T  21576739 cgtgtccgacatcgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgttggcgtatcagtgt 21576817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 423
Target Start/End: Original strand, 24906297 - 24906373
Alignment:
Q  350 tgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgt 423  Q
    ||||||| ||||||||| |||||||||   ||||| || || |||||||||||||| ||||||||||||||||||||    
T  24906297 tgtccgataccgacacttgtaattacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgt 24906373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 31084382 - 31084309
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||| ||||||| |||||||||   ||||| || || ||||||||||||||||||||| ||||||||||||||    
T  31084382 cgacatcgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 31084309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 14674323 - 14674255
Alignment:
Q  359 ccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||| |||||||||   ||||| || || ||||||||||||||||||||| ||||||||||||||    
T  14674323 ccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 14674255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 33178089 - 33178014
Alignment:
Q  349 gtgtccgacaccgacactagtaattac---aaattacgtaatcttttcaaattattagctgtgttggcgtgtcagt 421  Q
    |||||||||||||||||| ||||||||   |||||| || || |||| |||||||||| ||||| |||||||||||    
T  33178089 gtgtccgacaccgacacttgtaattacactaaattatgtgatttttttaaattattagttgtgtcggcgtgtcagt 33178014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 22013448 - 22013400
Alignment:
Q  376 aaattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||| ||||| ||| ||||||||||||||||| ||||||||||||||    
T  22013448 aaattatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtc 22013400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 17177061 - 17177096
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17177061 ttttcaaattattagctgtgttggcgtatcagtgtc 17177096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 21522809 - 21522736
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||| | |||||||||   ||||| || || |||| |||||||||||||||| ||||||||||||||    
T  21522809 cgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtc 21522736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 21533375 - 21533302
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||| | |||||||||   ||||| || || |||| |||||||||||||||| ||||||||||||||    
T  21533375 cgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtc 21533302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 39698600 - 39698527
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||| |||||| |||||||||   ||||| || || |||||||||||||||||||||  |||||||||||||    
T  39698600 cgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtc 39698527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 21542089 - 21542014
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    ||||||||||||| |||||||||   ||||| || ||||||| |||||||||| ||||| ||| ||||| ||||||    
T  21542089 cgacaccgacacttgtaattacactgaattatgttatctttttaaattattagttgtgtcggcatgtcaatgtctg 21542014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 41633794 - 41633719
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    ||||||||||| | |||||||||   ||||| ||||  ||||||||||||||||||||| || |||||||| ||||    
T  41633794 cgacaccgacatttgtaattacactgaattatgtaaatttttcaaattattagctgtgtcggagtgtcagtatctg 41633719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 424
Target Start/End: Complemental strand, 17123066 - 17123034
Alignment:
Q  392 tcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| |||||||||||||||||||    
T  17123066 tcaaattattagcggtgttggcgtgtcagtgtc 17123034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 42893424 - 42893346
Alignment:
Q  349 gtgtccgacaccgacactagtaattacaa---attacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||| |||||||||||| |||||||||    |||| || || ||||||||||||||||||||| || ||||| |||||    
T  42893424 gtgtctgacaccgacacttgtaattacactggattatgtgattttttcaaattattagctgtgtcggtgtgtccgtgtc 42893346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 21945566 - 21945487
Alignment:
Q  350 tgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    ||||||||||||||||| |||||||||   ||||| || || ||||||||||||||||||||| ||| ||||||||||||    
T  21945566 tgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtctg 21945487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 11596352 - 11596438
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctggtgttcgtgtc 437  Q
    ||||||| ||||| |||||||||   ||||| || || ||||||||||||||||| ||||||||| |||||||||||||| ||||||    
T  11596352 cgacacctacacttgtaattacactgaattatgtgattttttcaaattattagctttgttggcgtatcagtgtctggtgtccgtgtc 11596438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 2361969 - 2362048
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||||||||||  ||||||||   ||||| ||||| ||||||||||||||||||||| || |||||| ||||    
T  2361969 cgtgtccgacaccgacacttttaattacactaaattatgtaattttttcaaattattagctgtgtcggtgtgtcaatgtc 2362048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 23292980 - 23293059
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| ||||||| |   ||||| || || ||||||||||||||||||||| ||||||||| ||||    
T  23292980 cgtgtccgacaccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtc 23293059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 19482727 - 19482652
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    ||||||| ||||| |||||||||   ||||| || || ||||||||||||||| ||||| ||||||||||||||||    
T  19482727 cgacaccaacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtctg 19482652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 30299006 - 30298932
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgt-aatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| |||||||||   ||||| || | | ||||||||||||||||||||| ||||||||||||||    
T  30299006 cgacaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcggcgtgtcagtgtc 30298932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 30327874 - 30327800
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgt-aatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| |||||||||   ||||| || | | ||||||||||||||||||||| ||||||||||||||    
T  30327874 cgacaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcggcgtgtcagtgtc 30327800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 49431091 - 49431011
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgt-aatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||||||||||  ||||||||   ||||| || | | ||||||||||||||||||||| ||||||||| ||||    
T  49431091 cgtgtccgacaccgacacttttaattacactgaattatgtgatttttttcaaattattagctgtgtcggcgtgtcactgtc 49431011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 50280902 - 50280851
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtctggtgttcgtgtccgtat 442  Q
    ||||||||||||||||||||| |||||||| |||||  ||||| ||||||||||    
T  50280902 ttttcaaattattagctgtgtcggcgtgtccgtgtc--gtgttagtgtccgtat 50280851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 12797332 - 12797410
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| |||||||||   ||||| || || ||||||||||||||| | ||  ||||||||||||||    
T  12797332 cgtgtccgacaccgacacttgtaattacactgaattatgtgat-ttttcaaattattagttttgccggcgtgtcagtgtc 12797410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Complemental strand, 24544002 - 24543961
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtctggtgt 430  Q
    |||| |||||||||| ||||| ||||||||||||||||||||    
T  24544002 tttttaaattattagttgtgtcggcgtgtcagtgtctggtgt 24543961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 29205509 - 29205442
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttgg 412  Q
    ||||||| ||||||||||| |||||||||   ||||| || || |||||||||||||||| |||||||    
T  29205509 cgtgtccaacaccgacacttgtaattacactgaattatgtgattttttcaaattattagccgtgttgg 29205442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 419
Target Start/End: Original strand, 12895268 - 12895342
Alignment:
Q  348 cgtgtccgacaccgacactagtaattac---aaattacgtaatcttttcaaattattagctgtgttggcgtgtca 419  Q
    |||||||||||||||||||  |||||||   |||||| || || ||||||||||||||  ||||| |||||||||    
T  12895268 cgtgtccgacaccgacacttataattacacaaaattatgtgattttttcaaattattatttgtgtcggcgtgtca 12895342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 37559039 - 37558963
Alignment:
Q  351 gtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||||||| |||||||||   ||||| || || ||| ||||||||||||||||| ||||||||||||||    
T  37559039 gtccgacaccgacacttgtaattacattgaattatgtgatttttacaaattattagctgtgtcggcgtgtcagtgtc 37558963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 15972938 - 15972859
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| |||||||||   ||||  ||||| ||||||||||||||  ||||| ||||||||||||||    
T  15972938 cgtgtccgacaccgacacttgtaattacactgaattgtgtaattttttcaaattattaattgtgtcggcgtgtcagtgtc 15972859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 18841007 - 18841086
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||| |||||||||||| |||||||||   ||||| ||||| ||||||||||||||| |||||  |||||||||||||    
T  18841007 cgtgtctgacaccgacacttgtaattacacttaattatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtc 18841086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 424
Target Start/End: Original strand, 19536361 - 19536471
Alignment:
Q  315 ctatgaagcacggacactccttgggttaggcaacgtgtccgacaccgacactagtaattaca---aattacgt-aatcttttcaaattattagctgtgtt 410  Q
    |||||||||| |||||||||| || ||||||   |||||||||||||||||| |||||||||   ||||| || | | ||||||||||||||| |||||     
T  19536361 ctatgaagcatggacactcctcggattaggc---gtgtccgacaccgacacttgtaattacactgaattatgtgatttttttcaaattattagttgtgtc 19536457  T
Q  411 ggcgtgtcagtgtc 424  Q
    ||||||||| ||||    
T  19536458 ggcgtgtcattgtc 19536471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 426
Target Start/End: Complemental strand, 21624333 - 21624250
Alignment:
Q  347 acgtgtccgacaccgacactagtaattaca---aattacg-taatcttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    |||||||||||||||||||| |||||||||   ||||| | || | |||| |||||||||||||||| ||||||||||||||||    
T  21624333 acgtgtccgacaccgacacttgtaattacactgaattatgctatttttttaaaattattagctgtgtcggcgtgtcagtgtctg 21624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 18255945 - 18256038
Alignment:
Q  316 tatgaagcacggacactccttgggttaggcaacgtgtccgacaccgacactagtaattac---aaattacgtaatcttttcaaattattagctgtgt 409  Q
    ||||||||||||||||||||||| |||||   |||||||||||||||||||  |||||||   |||||| || || |||| ||||||||| ||||||    
T  18255945 tatgaagcacggacactccttggattagg---cgtgtccgacaccgacacttctaattacattaaattatgtgatttttttaaattattatctgtgt 18256038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 38117154 - 38117232
Alignment:
Q  349 gtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||| ||||| |||||||||   || || || || ||||||||||||||||||||| ||||||||||||||    
T  38117154 gtgtccgacaccaacacttgtaattacaccgaagtatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 38117232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 6940320 - 6940241
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||| || ||||||||| |||||||||   ||||| ||||  |||| |||||||||||||||| ||||||||||||||    
T  6940320 cgtgtcggataccgacacttgtaattacacttaattatgtaactttttaaaattattagctgtgtcggcgtgtcagtgtc 6940241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 30404844 - 30404923
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||| |||||||| |||||||||   ||||| || || |||||||||||||| | |||| ||||||||||||||    
T  30404844 cgtgtccgacgccgacacttgtaattacactgaattatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgtc 30404923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 21374706 - 21374772
Alignment:
Q  361 gacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||| |||||||||   ||||| ||||| ||||||||||||||||||||| ||||||| ||||||    
T  21374706 gacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgttagtgtc 21374772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 20539674 - 20539747
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| |||||||||   |||||  | || ||||||||||||||||||||| | ||||||||||||    
T  20539674 cgacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtc 20539747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Complemental strand, 27460047 - 27460012
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||| ||||||||||||||    
T  27460047 ttttcaaattattagctgtgtcggcgtgtcagtgtc 27460012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 2438713 - 2438777
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgt 409  Q
    ||||||||||||||||||| |||||||||   ||||| || || |||| ||||||||||||||||    
T  2438713 cgtgtccgacaccgacacttgtaattacactgaattatgtgattttttgaaattattagctgtgt 2438777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 18422027 - 18421949
Alignment:
Q  349 gtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||| ||||||||||||| |||||||||   ||||| || || |||| |||||||||  ||||| ||||||||||||||    
T  18422027 gtgttcgacaccgacacttgtaattacactgaattatgtgatatttttaaattattaattgtgtcggcgtgtcagtgtc 18421949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 30717457 - 30717489
Alignment:
Q  313 agctatgaagcacggacactccttgggttaggc 345  Q
    |||||||||||||||||||||||||| ||||||    
T  30717457 agctatgaagcacggacactccttggattaggc 30717489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 8863 - 8784
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| |||||||||   ||| |  | || ||||||||||||||||||||| ||||||||||||||    
T  8863 cgtgtccgacaccgacacttgtaattacactaaataatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 8784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 20873134 - 20873055
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| |||||||||   ||||| || || |||||||||||||| || ||| ||||||||||||||    
T  20873134 cgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattattatctatgtcggcgtgtcagtgtc 20873055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 22652035 - 22651962
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| ||||||| |   ||||| || || ||||||||||||||||||||| ||||||||||||||    
T  22652035 cgacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 22651962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 24613585 - 24613509
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtg 422  Q
    ||||||||||||||||||| |||||||||   ||||| || || ||||||||||||||||||||| || |||||||||    
T  24613585 cgtgtccgacaccgacacttgtaattacacttaattatgtgat-ttttcaaattattagctgtgtcggtgtgtcagtg 24613509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 30271224 - 30271277
Alignment:
Q  322 gcacggacactccttgggttaggcaacgtgtccgacaccgacactagtaattaca 376  Q
    |||||||||||||| | |||||||| ||||||||||||||||||| |||||||||    
T  30271224 gcacggacactcctcgagttaggca-cgtgtccgacaccgacacttgtaattaca 30271277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 22197780 - 22197817
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  22197780 ttttcaaattattagctgtgttggcgtgttagtgtctg 22197817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 423
Target Start/End: Complemental strand, 22596056 - 22595981
Alignment:
Q  351 gtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgt 423  Q
    |||||||||| ||||| |||||||||   ||||| || || |||| |||||||||||||||| |||||||||||||    
T  22596056 gtccgacaccaacacttgtaattacactgaattatgttatttttttaaattattagctgtgtcggcgtgtcagtgt 22595981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 30077385 - 30077460
Alignment:
Q  352 tccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||| |||||| |||||||||   ||||| || || |||||||||||||||||| ||||||||||| |||||    
T  30077385 tccgacacggacacttgtaattacactgaattatgtgatgttttcaaattattagctgcgttggcgtgtccgtgtc 30077460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 36450748 - 36450827
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| ||||| |||||||||   ||||  || || ||||||||||||||| ||||| ||||||||||||||    
T  36450748 cgtgtccgacacctacacttgtaattacactgaattctgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 36450827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 13437002 - 13437037
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||| ||||||||||||||    
T  13437002 ttttcaaattattagctgtgtcggcgtgtcagtgtc 13437037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 15816129 - 15816202
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||||  ||||||||   ||||| || || ||||||||||||||| ||||| ||||||||||||||    
T  15816129 cgacaccgacacttataattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 15816202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 18170478 - 18170555
Alignment:
Q  350 tgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||| | |||||||||   ||||| ||||| |||||||||| |||  ||||| ||||||||||||||    
T  18170478 tgtccgacaccgacatttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtc 18170555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 18634046 - 18634123
Alignment:
Q  350 tgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||| | |||||||||   ||||| ||||| |||||||||| |||  ||||| ||||||||||||||    
T  18634046 tgtccgacaccgacatttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtc 18634123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 25192385 - 25192420
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||| ||||||||||||||    
T  25192385 ttttcaaattattagctgtgtcggcgtgtcagtgtc 25192420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 29510342 - 29510377
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29510342 ttttcaaattattagctgtgtcggcgtgtcagtgtc 29510377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 4673463 - 4673500
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  4673463 ttttcaaattattatctgtgtcggcgtgtcagtgtctg 4673500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 30271329 - 30271370
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtctggtgt 430  Q
    ||||||||| ||||||||||| |||||||||||||| |||||    
T  30271329 ttttcaaatgattagctgtgtcggcgtgtcagtgtccggtgt 30271370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 426
Target Start/End: Original strand, 4298887 - 4298961
Alignment:
Q  355 gacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctg 426  Q
    |||||||||||| |||||||||   ||||| || || |||||||||||||| |||||| ||||||| ||| ||||    
T  4298887 gacaccgacacttgtaattacattaaattatgtgattttttcaaattattaactgtgtcggcgtgttagtatctg 4298961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 4948717 - 4948659
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattag 403  Q
    ||||||||||||||||||| |||||||||   ||||| || || |||||||||||||||    
T  4948717 cgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 4948659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 25566900 - 25566842
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgt 409  Q
    ||||||||||||| |||||||||   ||||| || || |||||||||||||||||||||    
T  25566900 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgt 25566842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 25481967 - 25481888
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| ||||| |||||||||   ||||| || || ||||||||||||||||||||| ||||||||| ||||    
T  25481967 cgtgtccgacaccaacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtc 25481888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 424
Target Start/End: Complemental strand, 27945137 - 27945027
Alignment:
Q  315 ctatgaagcacggacactccttgggttaggcaacgtgtc-cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgtt 410  Q
    ||||||||||||||||||||| | |||||||   ||| | ||||||||||||| |||||||||   ||||| ||||| || ||||||||||||  ||||     
T  27945137 ctatgaagcacggacactcctcgagttaggc---gtgacacgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtc 27945041  T
Q  411 ggcgtgtcagtgtc 424  Q
    ||||||||||||||    
T  27945040 ggcgtgtcagtgtc 27945027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 440
Target Start/End: Original strand, 7197292 - 7197385
Alignment:
Q  349 gtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctggtgttcgtgtccgt 440  Q
    |||||||||||||||||| |||||||||   |||||  | || |||| |||||||||||||||| ||||||||| ||||| |||||||| |||||    
T  7197292 gtgtccgacaccgacacttgtaattacattgaattaaatgatttttttaaattattagctgtgtcggcgtgtcaatgtct-gtgttcgtatccgt 7197385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 9408334 - 9408420
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctggtgttcgtgtc 437  Q
    ||||||||||||| |||||||||   ||||| || || ||||||||||||||  ||||| || ||||||||||||||||| ||||||    
T  9408334 cgacaccgacacttgtaattacactaaattatgtgattttttcaaattattaattgtgtcggtgtgtcagtgtctggtgtccgtgtc 9408420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 24339701 - 24339628
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||| |||||||||   ||||| || || ||||||||||||||||||||| ||||||||| ||||    
T  24339701 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtc 24339628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 11061069 - 11061149
Alignment:
Q  347 acgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||| |||||||||||| ||||||| |   ||||| || || ||||||||||||||||||||| || |||||||||||    
T  11061069 acgtgtctgacaccgacacttgtaattatactaaattatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtc 11061149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 417
Target Start/End: Complemental strand, 28155634 - 28155563
Alignment:
Q  349 gtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgt 417  Q
    |||||||||||||||||| |||||||||   ||||| ||||| || ||||||||||||| |||| |||||||    
T  28155634 gtgtccgacaccgacacttgtaattacaccgaattatgtaattttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 24105738 - 24105664
Alignment:
Q  353 ccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||| |||||||| |||||||||   ||| | | ||| ||||||||||||||||||||| ||||||||||||||    
T  24105738 ccgactccgacacttgtaattacactgaatcatgcaattttttcaaattattagctgtgtcggcgtgtcagtgtc 24105664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Complemental strand, 8479002 - 8478967
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||| |||||||||||||||||||||||    
T  8479002 ttttcaaattatcagctgtgttggcgtgtcagtgtc 8478967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 13770750 - 13770677
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||| ||||||| |||||||||   ||||| ||||| |||| |||||||||||||||| ||||| ||||||||    
T  13770750 cgacaacgacacttgtaattacactgaattatgtaatttttttaaattattagctgtgtcggcgtatcagtgtc 13770677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 7438764 - 7438693
Alignment:
Q  355 gacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgt 423  Q
    |||||||||||| |||||||||   ||||| || || |||||||||||||| |||||| ||| |||||||||    
T  7438764 gacaccgacacttgtaattacattgaattatgtgattttttcaaattattaactgtgtcggcatgtcagtgt 7438693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 15680874 - 15680795
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||||||||||  ||||||||   ||||| || || ||||  ||||||||||| ||| ||||||||||||||    
T  15680874 cgtgtccgacaccgacacttataattacactaaattatgtgattttttttaattattagctatgtcggcgtgtcagtgtc 15680795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 21880217 - 21880158
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagc 404  Q
    ||||||||||||||||||| |||||||||   ||||| ||||| || |||||||||||||    
T  21880217 cgtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagc 21880158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 424
Target Start/End: Complemental strand, 46776 - 46668
Alignment:
Q  315 ctatgaagcacggacactccttgggttaggcaacgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttg 411  Q
    ||||||||||||||||||||| || ||||||   ||||| |||||||||| | |||||||||   ||||| || || |||||||||||||| |||||| |    
T  46776 ctatgaagcacggacactcctcggattaggc---gtgtc-gacaccgacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcg 46681  T
Q  412 gcgtgtcagtgtc 424  Q
    |||||||| ||||    
T  46680 gcgtgtcattgtc 46668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 456 - 535
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||| |||||||||   ||||  || || |||||||||||||||| |||| ||||| ||||||||    
T  456 cgtgtccgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagcagtgtcggcgtatcagtgtc 535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 7027 - 7105
Alignment:
Q  349 gtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||| ||||| ||||||| |   ||||| ||||| ||||||||||||||||||||| | ||| ||||||||    
T  7027 gtgtccgacacctacacttgtaattatactaaattatgtaattttttcaaattattagctgtgtcgacgtatcagtgtc 7105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 20231 - 20158
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||| |||||| |||||||||   ||||| || || ||||||||||||||||||||| ||||||||| ||||    
T  20231 cgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtc 20158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Complemental strand, 51832 - 51797
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||| ||||||||||||||    
T  51832 ttttcaaattattagctgtgtcggcgtgtcagtgtc 51797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 442
Target Start/End: Complemental strand, 70343 - 70247
Alignment:
Q  348 cgtgtccgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtctggtgttcgtgtccgtat 442  Q
    |||||||||||||||||||  ||||||||   ||||| || || |||||||||||||| |||||| | | |||| |||||| ||||| ||||||||||    
T  70343 cgtgtccgacaccgacacttataattacactgaattatgttattttttcaaattattaactgtgtcgacatgtctgtgtct-gtgtttgtgtccgtat 70247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Complemental strand, 71744 - 71709
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    ||||||||||||||||||||| ||||||||||||||    
T  71744 ttttcaaattattagctgtgtcggcgtgtcagtgtc 71709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 241653 - 241580
Alignment:
Q  354 cgacaccgacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||||||||||  ||||||||   ||||| || || ||| ||||||||||||||||| ||||||||||||||    
T  241653 cgacaccgacactcataattacactaaattatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtc 241580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 123646 - 123612
Alignment:
Q  389 ttttcaaattattagctgtgttggcgtgtcagtgt 423  Q
    |||| ||||||||||||||||||||||||||||||    
T  123646 tttttaaattattagctgtgttggcgtgtcagtgt 123612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 92859 - 92793
Alignment:
Q  361 gacactagtaattaca---aattacgtaatcttttcaaattattagctgtgttggcgtgtcagtgtc 424  Q
    |||||| |||||||||   ||||| ||||| || ||||||||||||| |||| ||||||||||||||    
T  92859 gacacttgtaattacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtc 92793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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