View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_12 (Length: 440)
Name: NF18050_low_12
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 13975399 - 13974992
Alignment:
| Q |
16 |
aggcaaacttggctgaacattggaatttgtggattcgtccttttcttggttgtaatcaggaagaggaatcctgaatgaattggcaagtaatgattgggca |
115 |
Q |
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| T |
13975399 |
aggcaaacttggctgaacattggaatttgtggattcgtccttttcttggttgtaatcaggaagaggaatcctgaatgaattggcaagtaatgattgggca |
13975300 |
T |
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| Q |
116 |
cccatgaatgtggaaatcttctgttgctttccggcgaggaggttctcacaatggagagccatttctttatatggcatgttagaaggtgttgaaacagaaa |
215 |
Q |
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| T |
13975299 |
cccatgaatgtggaaatcttctgttgctttccggcgaggaggttctcacaatggagagccatttctttatatggcatgttagaaggtgttgaaacagaaa |
13975200 |
T |
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| Q |
216 |
tccttcctacatgatgtgttgtctccacaacctgcatatgaattatcgttttacaactcattattttttagaattaatagtataattcgacgaggaaatt |
315 |
Q |
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| T |
13975199 |
tccttcctacatgatgtgttgtctccacaacctgcatatgaattatcgttttacaactcattattttttagaattaatagtataattcgacgaggaaatt |
13975100 |
T |
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| Q |
316 |
gaagagagaaatggatgagtgttaagagaatgnnnnnnnnnnnnnctctatagcttaattaaaatcgaatatgttatcggtgtgtacatatcaatgaaca |
415 |
Q |
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| T |
13975099 |
gaagagagaaatggatgagtgttaagagaatgttttttcatttttctcaatagcttaattaaaatcgaatatgttatcgttgtgtacatttcaatgaaca |
13975000 |
T |
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| Q |
416 |
gaaaaact |
423 |
Q |
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| T |
13974999 |
gaaaaact |
13974992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 56 - 183
Target Start/End: Complemental strand, 13985588 - 13985461
Alignment:
| Q |
56 |
ttttcttggttgtaatcaggaagaggaatcctgaatgaattggcaagtaatgattgggcacccatgaatgtggaaatcttctgttgctttccggcgagga |
155 |
Q |
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| T |
13985588 |
ttttcttggttgtaatctggaagaggaatcctgaatgaattggtaagtaatgaatgggcacccatgaaagtggatatcttctgttgctttccggtgagga |
13985489 |
T |
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| Q |
156 |
ggttctcacaatggagagccatttcttt |
183 |
Q |
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| T |
13985488 |
ggttctcacaatggagagtcatttcttt |
13985461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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