View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_13 (Length: 433)
Name: NF18050_low_13
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Original strand, 35416076 - 35416478
Alignment:
| Q |
14 |
agaagaatatatgagataggctacaaattgagttctctctgcaatggagccgctggtgataccggcagcggcgatggcgaaggcccactggtagaggaaa |
113 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35416076 |
agaagaatatatgagataggcgacaaattgagttctctctgcaatggagccgctggtgataccggcagcagcgatggcgaaggcccactggtagaggaag |
35416175 |
T |
|
| Q |
114 |
aagctatagtcacctgaaggtgaagggtaatcccttagaccgaaaaagtggcggccgatgaagccgttggagggtgctccaaaggcgaaagcaaagccga |
213 |
Q |
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||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35416176 |
aagctgtagtcaccggaaggtgaaggataatcccttagaccgaaaaagtggcggccaatgaagccgttggagggtgctccaaaggcgaaagcaaagccga |
35416275 |
T |
|
| Q |
214 |
agagatagtaggagaggccaccagctgcagcgtcgaggacattggtgagcatgatgttcatagtgtttttggctcgaacggagccggcacagagcatggc |
313 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
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| T |
35416276 |
agagatagtaggagaggccaccggctgcagcgtcaaggacattggtgagcatgatgttcatagtgtttttggctcgaacggagccagcgcagagcatagc |
35416375 |
T |
|
| Q |
314 |
aaaaccaagctgcatggcaaagactaaataagctgagaagagaaggtaggtgttgtctattgcataggtggtgtcgctgagtttatttgagatggtgttg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35416376 |
gaaaccaagctgcatggcaaagactaaataagctgagaagagaaggtaggtgttgtctattgcataagtggtgtcgctgagtttatttgagatggtgttg |
35416475 |
T |
|
| Q |
414 |
aat |
416 |
Q |
| |
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||| |
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| T |
35416476 |
aat |
35416478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 186 - 370
Target Start/End: Original strand, 17091254 - 17091438
Alignment:
| Q |
186 |
ggtgctccaaaggcgaaagcaaagccgaagagatagtaggagaggccaccagctgcagcgtcgaggacattggtgagcatgatgttcatagtgtttttgg |
285 |
Q |
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|||| ||| ||||| || ||||| ||||||||||||||| | | || ||||| || |||||||| ||||| ||||||||||||||||| ||||| || | |
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| T |
17091254 |
ggtgttccgaaggcaaaggcaaaaccgaagagatagtagaaaacaccgccagcagcggcgtcgagaacatttgtgagcatgatgttcatggtgttcttag |
17091353 |
T |
|
| Q |
286 |
ctcgaacggagccggcacagagcatggcaaaaccaagctgcatggcaaagactaaataagctgagaagagaaggtaggtgttgtc |
370 |
Q |
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| T |
17091354 |
cacgaactgaaccagcacagagcatggcaaaaccaagttgcatagagaagacaaggtaagctgagaataaaagataggtgttgtc |
17091438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 46670240 - 46670358
Alignment:
| Q |
252 |
acattggtgagcatgatgttcatagtgtttttggctcgaacggagccggcacagagcatggcaaaaccaagctgcatggcaaagactaaataagctgaga |
351 |
Q |
| |
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|||||||| | ||| |||||||||||||||||||| ||||| || |||||||| ||||| |||||||| || ||||||||||| || | |||||||||| |
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| T |
46670240 |
acattggttaacataatgttcatagtgtttttggcacgaacagaaccggcacaaagcatagcaaaacctagttgcatggcaaaaacaaggtaagctgaga |
46670339 |
T |
|
| Q |
352 |
agagaaggtaggtgttgtc |
370 |
Q |
| |
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| |||||||| |||||||| |
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| T |
46670340 |
atagaaggtaagtgttgtc |
46670358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 388
Target Start/End: Original strand, 39642043 - 39642179
Alignment:
| Q |
252 |
acattggtgagcatgatgttcatagtgtttttggctcgaacggagccggcacagagcatggcaaaaccaagctgcatggcaaagactaaataagctgaga |
351 |
Q |
| |
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|||||||| | ||| || ||||| ||||||||||| |||||||| || ||||| |||||||||||||| || ||||||||||| || | |||| |||| |
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| T |
39642043 |
acattggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaagaga |
39642142 |
T |
|
| Q |
352 |
agagaaggtaggtgttgtctattgcataggtggtgtc |
388 |
Q |
| |
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||||||||||||||||||| | |||||||| ||||| |
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| T |
39642143 |
agagaaggtaggtgttgtcaacggcataggttgtgtc |
39642179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 361
Target Start/End: Original strand, 25545093 - 25545202
Alignment:
| Q |
252 |
acattggtgagcatgatgttcatagtgtttttggctcgaacggagccggcacagagcatggcaaaaccaagctgcatggcaaagactaaataagctgaga |
351 |
Q |
| |
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|||||||||||||| |||||||| | |||||||| || || || || ||||| | ||||||||| || || ||||| |||||||||| || | |||| |
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| T |
25545093 |
acattggtgagcattatgttcatggcatttttggcacggacagatcctgcacatatcatggcaaagcctagttgcattacaaagactaagtaggtagaga |
25545192 |
T |
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| Q |
352 |
agagaaggta |
361 |
Q |
| |
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|||||||||| |
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|
| T |
25545193 |
agagaaggta |
25545202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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