View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_14 (Length: 429)
Name: NF18050_low_14
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 3884721 - 3884312
Alignment:
| Q |
1 |
agtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttatcagnnnnnnngg |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3884721 |
agtgaattggaagatgatgaacaacctattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttatcagcttttttag |
3884622 |
T |
|
| Q |
101 |
ataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884621 |
ataagagcttcacaaggtttgatcgtaattggattcatagagttggtg-ttcttctggtggtattgttttcattcttattcttctctttcttgttttgaa |
3884523 |
T |
|
| Q |
201 |
gtgtaaagcatctctgttgtaatgtaagaaccttgcatgcatgctcaaggaaggtttgtgataaaactaagtgttgaatcttgaacttaagatgaattta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884522 |
gtgtaaagcatctctgttgtaatgtaagaaccttgcatgcatgctcaaggaaggtttatgataaaactaagtgttgaatcttgaacttaagatgaattta |
3884423 |
T |
|
| Q |
301 |
tgttttaagctaattattgtctgctttcaaagtacaatgtatttaagttaataaacttgatattttcatggtagaaatattagcaaaatctattaagaac |
400 |
Q |
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| T |
3884422 |
tgttttaagctaattattgtctgcgctcaaagtacaatgtatttaagttaataaacttgatattttcatggtagaaatattagctaaatctattaagaac |
3884323 |
T |
|
| Q |
401 |
aattatctttt |
411 |
Q |
| |
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||||||||||| |
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| T |
3884322 |
aattatctttt |
3884312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3874193 - 3873957
Alignment:
| Q |
1 |
agtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttatcagnnnnnnngg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
3874193 |
agtgagttggaagatgatgaacaaccaattagtgttactttatggttaccaatgttactttttgtattggttttagtcatatctttatcagcttttttgg |
3874094 |
T |
|
| Q |
101 |
ataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3874093 |
ataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaa |
3873994 |
T |
|
| Q |
201 |
gtgtaaagcatctctgttgtaatgtaagaaccttgcatgc |
240 |
Q |
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| T |
3873993 |
gtgtaaagcatct---ttgtaatgtaagaaccttgcatgc |
3873957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 303 - 411
Target Start/End: Complemental strand, 3873352 - 3873239
Alignment:
| Q |
303 |
ttttaagctaattattgtctgctttcaaagtacaat-----gtatttaagttaataaacttgatattttcatggtagaaatattagcaaaatctattaag |
397 |
Q |
| |
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|||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||| ||||||||||||| | |||||||||| || |
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|
| T |
3873352 |
ttttaagctaattagtgtcttctttgaaagtacaataatgtgtatttaagctaataaacttcatattttcttggtagaaatatttgtaaaatctatttag |
3873253 |
T |
|
| Q |
398 |
aacaattatctttt |
411 |
Q |
| |
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| |||||||||||| |
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|
| T |
3873252 |
agcaattatctttt |
3873239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 48453561 - 48453465
Alignment:
| Q |
117 |
gtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatct |
213 |
Q |
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|||||||||| | ||||||||||||||| |||| || || || |||||| || | ||| ||| | |||| |||||| |||||||||| ||| ||||| |
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| T |
48453561 |
gtttgatcgttactggattcatagagtttgtggctcctcaggcggtatttttgtgattattactgttctttttcttattttgaagtggaaatcatct |
48453465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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