View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18050_low_15 (Length: 419)

Name: NF18050_low_15
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18050_low_15
NF18050_low_15
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-408)||(50322-50729)
[»] chr3 (25 HSPs)
chr3 (198-408)||(10434561-10434771)
chr3 (223-408)||(10579968-10580153)
chr3 (221-408)||(10376362-10376549)
chr3 (198-408)||(10364315-10364525)
chr3 (250-408)||(10195067-10195225)
chr3 (185-408)||(9838190-9838413)
chr3 (185-408)||(9849068-9849291)
chr3 (250-408)||(10088184-10088342)
chr3 (222-408)||(11768600-11768786)
chr3 (222-408)||(10076632-10076818)
chr3 (220-401)||(13289029-13289210)
chr3 (221-321)||(10505150-10505250)
chr3 (220-401)||(13160344-13160525)
chr3 (220-401)||(13332268-13332449)
chr3 (44-162)||(10076386-10076505)
chr3 (220-401)||(13170395-13170576)
chr3 (86-169)||(10376658-10376741)
chr3 (86-168)||(10364611-10364693)
chr3 (220-401)||(13343453-13343634)
chr3 (286-354)||(10084150-10084218)
chr3 (286-351)||(10191073-10191138)
chr3 (293-408)||(11131543-11131658)
chr3 (293-408)||(10888743-10888858)
chr3 (293-408)||(11149371-11149486)
chr3 (293-408)||(8860723-8860838)
[»] chr2 (2 HSPs)
chr2 (220-407)||(26906261-26906448)
chr2 (245-378)||(3438480-3438617)
[»] chr8 (2 HSPs)
chr8 (201-347)||(44958256-44958402)
chr8 (369-408)||(44958226-44958265)
[»] scaffold0002 (2 HSPs)
scaffold0002 (220-401)||(146463-146644)
scaffold0002 (220-401)||(136412-136593)
[»] chr5 (1 HSPs)
chr5 (220-381)||(19956981-19957146)
[»] chr7 (1 HSPs)
chr7 (295-402)||(29836112-29836219)


Alignment Details
Target: scaffold0083 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 50729 - 50322
Alignment:
Q  1 ctgctgagctttgctttccagctttaaatacagtactgttaaccattaattcacatacagctaagtcttcatgagtttacctttactatatacacttcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50729 ctgctgagctttgctttccagctttaaatacagtactgttaaccattaattcacatacagctaagtcttcatgagtttacctttactatatgcacttcca 50630  T
Q  101 accattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgctcgtaatttccatcaaaatttcatactagttgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50629 accattcaaaaacagcactgtcagtgttatccattcattcacaaccgagtcttctttgagtcattgctcgtaatttccatcaaaatttcatactagttgg 50530  T
Q  201 tttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaaca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  50529 tttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctcactgcaactgttcagaccttagttgagaaacttgcttcaaca 50430  T
Q  301 gagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcag 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  50429 gagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgctg 50330  T
Q  401 aggagaag 408  Q
    ||||||||    
T  50329 aggagaag 50322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 198 - 408
Target Start/End: Complemental strand, 10434771 - 10434561
Alignment:
Q  198 tggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttca 297  Q
    ||||||| ||||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  10434771 tggtttgctttaacaatatcattagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttca 10434672  T
Q  298 acagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatg 397  Q
    | |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10434671 aaagagtttcgtgattacatcaaaaacaccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatg 10434572  T
Q  398 cagaggagaag 408  Q
    |||||||||||    
T  10434571 cagaggagaag 10434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 223 - 408
Target Start/End: Original strand, 10579968 - 10580153
Alignment:
Q  223 aagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaaa 322  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  10579968 aagatggctgcaactatgattggaggtgctttcctctctgcaactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaa 10580067  T
Q  323 acactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaag 408  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10580068 acactaagctcaatgtctcactcttgaggcagcttaaaacaacactgctcactcttcaagttgtgctggatgatgcagaggagaag 10580153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 221 - 408
Target Start/End: Complemental strand, 10376549 - 10376362
Alignment:
Q  221 agaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaa 320  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  10376549 agaagatggctgcaactatgataggaggtgcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaacagagtttcttgattacatcaa 10376450  T
Q  321 aaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaag 408  Q
    |||||| || |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10376449 aaacaccaaactcaatgtctcactcttgaggcagttaaaaacaacactgctcactcttcaagttgtgctggatgatgcagaggagaag 10376362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 198 - 408
Target Start/End: Complemental strand, 10364525 - 10364315
Alignment:
Q  198 tggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttca 297  Q
    ||||||| ||||||||||||   |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  10364525 tggtttgctttaacaatatcaacagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcagaccttagttgagaaacttgcttca 10364426  T
Q  298 acagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatg 397  Q
    ||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| |  |||||||||| |||||||||||||||||||||||||| |    
T  10364425 acagagtttcttgattacatcaaaaacaccaaactcaatgactcactcttgaggcagttacaaacaacactgctcactcttcaagttgtgctggatgacg 10364326  T
Q  398 cagaggagaag 408  Q
    |||| ||||||    
T  10364325 cagaagagaag 10364315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 250 - 408
Target Start/End: Original strand, 10195067 - 10195225
Alignment:
Q  250 gcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttga 349  Q
    |||||||||||||||||| ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||    
T  10195067 gcttttctctctgcaactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtctcactcttga 10195166  T
Q  350 ggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaag 408  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  10195167 ggcagctgaaaacaacactgctcactcttcaagttgtgctggatgatgcggaggagaag 10195225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 185 - 408
Target Start/End: Original strand, 9838190 - 9838413
Alignment:
Q  185 atttcatactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtaga 284  Q
    |||||||||||  || |||| ||| |||| |||   |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||    
T  9838190 atttcatactacctgatttgcttttacaagatcaacagaagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttga 9838289  T
Q  285 gaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagtt 384  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  || ||||  | |||| |||||| | |    
T  9838290 gaaacttgcttcaactgagtttcgtgattacatcaaaaacactaagctcaatgtctcactcttgaggcagttacaagcaaccatgctcaatcttcaggct 9838389  T
Q  385 gtgctggatgatgcagaggagaag 408  Q
    || || ||||||||||||||||||    
T  9838390 gttctagatgatgcagaggagaag 9838413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 185 - 408
Target Start/End: Original strand, 9849068 - 9849291
Alignment:
Q  185 atttcatactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtaga 284  Q
    |||||||||||  || |||| ||| |||| |||   |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||    
T  9849068 atttcatactacctgatttgcttttacaagatcaacagaagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttga 9849167  T
Q  285 gaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagtt 384  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  || ||||  | |||| |||||| | |    
T  9849168 gaaacttgcttcaactgagtttcgtgattacatcaaaaacactaagctcaatgtctcactcttgaggcagttacaagcaaccatgctcaatcttcaggct 9849267  T
Q  385 gtgctggatgatgcagaggagaag 408  Q
    || || ||||||||||||||||||    
T  9849268 gttctagatgatgcagaggagaag 9849291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 250 - 408
Target Start/End: Original strand, 10088184 - 10088342
Alignment:
Q  250 gcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttga 349  Q
    |||||||||||||||||| ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||| ||    
T  10088184 gcttttctctctgcaactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtctcactctcga 10088283  T
Q  350 ggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaag 408  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  10088284 ggcagctgaaaacaacactgctcactcttcaagttgtgctggatgatgcggaggagaag 10088342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 222 - 408
Target Start/End: Original strand, 11768600 - 11768786
Alignment:
Q  222 gaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaa 321  Q
    ||||||||| ||| ||||||| ||||| ||||||||||| |||||| | || || ||  | |||||||||||||||||||||||||||||||||||||||    
T  11768600 gaagatggcggcaactatgataggaggcgcttttctctcggcaactatgcaaaccttgtttgagaaacttgcttcaacagagtttcttgattacatcaaa 11768699  T
Q  322 aacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaag 408  Q
    ||||| ||||| ||||||||||||||||||||  | |||||||| || ||||| ||||| | ||| ||||||||||| |||||||||    
T  11768700 aacaccaagctgaatgtctcactcttgaggcaattaaaaacaaccctgctcacacttcaggctgtactggatgatgcggaggagaag 11768786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 222 - 408
Target Start/End: Original strand, 10076632 - 10076818
Alignment:
Q  222 gaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaa 321  Q
    ||||||||||||| ||||||| ||||| |||||||||  ||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||    
T  10076632 gaagatggctgcaactatgataggaggtgcttttctccatgcaactgttcagaccttagttgagaaacttacttcaactgagtttcttgattacatcaaa 10076731  T
Q  322 aacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaag 408  Q
    ||||| || || ||||| |||||||| || ||| |  |||||||  | |||| |||||| | ||| || ||||||||||||||||||    
T  10076732 aacacaaatctgaatgtatcactcttcagacagttacaaacaaccatgctcaatcttcaggctgtactagatgatgcagaggagaag 10076818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 220 - 401
Target Start/End: Original strand, 13289029 - 13289210
Alignment:
Q  220 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 319  Q
    ||||| ||||||||| || || | |||||||||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  13289029 tagaaaatggctgcaactttggtgggaggagcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 13289128  T
Q  320 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 401  Q
     |||||  ||||| |||  ||||||||||    || || |||||||||| ||| ||||||| || |||||||||||||||||    
T  13289129 gaaacaacaagctgaattcctcactcttggcagagttggaaacaacactactcgctcttcaggtggtgctggatgatgcaga 13289210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 221 - 321
Target Start/End: Original strand, 10505150 - 10505250
Alignment:
Q  221 agaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaa 320  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||    
T  10505150 agaagatggctgcaactatgataggaggaacttttctctctgcaactgttcagaccttagttgacaaacttgcttcaacagagtttcgtgattacatcaa 10505249  T
Q  321 a 321  Q
    |    
T  10505250 a 10505250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 401
Target Start/End: Original strand, 13160344 - 13160525
Alignment:
Q  220 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 319  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| | |||||||||||||  |||||||  |||||||||||    
T  13160344 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacatca 13160443  T
Q  320 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 401  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| || |||||||||||||||||    
T  13160444 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggtggtgctggatgatgcaga 13160525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 401
Target Start/End: Original strand, 13332268 - 13332449
Alignment:
Q  220 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 319  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  13332268 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 13332367  T
Q  320 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 401  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| |  |||||||||||||||||    
T  13332368 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggtgctggatgatgcaga 13332449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 10076386 - 10076505
Alignment:
Q  44 cattaattcacatacagctaagtcttcatgagtttacc-tttactatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcac 142  Q
    ||||||||||||||||  ||||||||| ||||| |||| ||||| |||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||    
T  10076386 cattaattcacatacatataagtcttcttgagtctaccctttacaatatgcacttccaaccactcaaaaacagcgctgttagtgttatccattcattcac 10076485  T
Q  143 aaccgactcttctttgagtc 162  Q
    || ||| |||||||||||||    
T  10076486 aagcgagtcttctttgagtc 10076505  T

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Target: chr3; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 220 - 401
Target Start/End: Original strand, 13170395 - 13170576
Alignment:
Q  220 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 319  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  13170395 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 13170494  T
Q  320 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 401  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| |  || || |||||||||||    
T  13170495 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggttcttgatgatgcaga 13170576  T

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Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 10376741 - 10376658
Alignment:
Q  86 ctatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgctc 169  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||| ||||||    
T  10376741 ctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcactcacaagcgagtcttctttgagtctttgctc 10376658  T

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Target: chr3; HSP #18
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 10364693 - 10364611
Alignment:
Q  86 ctatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgct 168  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||| |||||    
T  10364693 ctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcattcacaagcaagtcttctttgagtctttgct 10364611  T

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Target: chr3; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 220 - 401
Target Start/End: Original strand, 13343453 - 13343634
Alignment:
Q  220 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 319  Q
    ||||| ||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  ||||||||| |    
T  13343453 tagaaaatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacataa 13343552  T
Q  320 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 401  Q
     |||||| ||||| |||  ||| || ||     || || |||||||||| ||| ||||||| |  |||||||||||||||||    
T  13343553 gaaacaccaagctgaattcctcgctgtttgcagagttggaaacaacactgctcgctcttcaggcggtgctggatgatgcaga 13343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 10084150 - 10084218
Alignment:
Q  286 aaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcag 354  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  10084150 aaacttgcttcaacagattttcttgattacatcaaaaacaccaagccaaatgtctcactcttgaggcag 10084218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 10191073 - 10191138
Alignment:
Q  286 aaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgagg 351  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  10191073 aaacttgcttcaacagattttcttgattacatcaaaaacaccaagccaaatgtctcactcttgagg 10191138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 408
Target Start/End: Complemental strand, 11131658 - 11131543
Alignment:
Q  293 cttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga 392  Q
    ||||||| ||||||| ||||| |||||| ||||  ||||| |||||||||||||||| |||| |  |||||||||| ||   |||||||| |||||||||    
T  11131658 cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacactgctggttcttcaagctgtgctgga 11131559  T
Q  393 tgatgcagaggagaag 408  Q
    |||||| |||||||||    
T  11131558 tgatgctgaggagaag 11131543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 293 - 408
Target Start/End: Original strand, 10888743 - 10888858
Alignment:
Q  293 cttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga 392  Q
    ||||||| ||||||| ||||| |||||| ||||  ||||| |||||||||||||||| |||| |  ||||||| || ||   |||||||| |||||||||    
T  10888743 cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacgctgctggttcttcaagctgtgctgga 10888842  T
Q  393 tgatgcagaggagaag 408  Q
    |||||| |||||||||    
T  10888843 tgatgctgaggagaag 10888858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 293 - 408
Target Start/End: Complemental strand, 11149486 - 11149371
Alignment:
Q  293 cttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga 392  Q
    ||||||| ||||||| ||||| |||||| ||||  ||||| |||||||||||||||| |||| |  |||||||||| ||   |||||||| |||||||||    
T  11149486 cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacactgctggttcttcaagctgtgctgga 11149387  T
Q  393 tgatgcagaggagaag 408  Q
    |||||| || ||||||    
T  11149386 tgatgctgatgagaag 11149371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 408
Target Start/End: Original strand, 8860723 - 8860838
Alignment:
Q  293 cttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga 392  Q
    ||||||| ||||||| ||||| |||||| ||||  ||||| || ||||||||||||| |||| |  || |||| || ||   |||||||| |||||||||    
T  8860723 cttcaaccgagtttcgtgatttcatcaacaacagaaagctgaacgtctcactcttgaagcagttacaagcaacgctgctggttcttcaagctgtgctgga 8860822  T
Q  393 tgatgcagaggagaag 408  Q
    ||||||||||||||||    
T  8860823 tgatgcagaggagaag 8860838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 220 - 407
Target Start/End: Original strand, 26906261 - 26906448
Alignment:
Q  220 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 319  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||||||||||||||||    
T  26906261 tagaagatggctgcagctatgataggagaagcttttctctctgcaattgttcagactttagttgagaaacttgtttcaacacagtttcttgattacatca 26906360  T
Q  320 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaa 407  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||    
T  26906361 aaaacaccaagctcaatgtctcactcttgaggcagctaaaaacaacactgctcactctgcaggttgtgctggatgatgcagaggagaa 26906448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 378
Target Start/End: Complemental strand, 3438617 - 3438480
Alignment:
Q  245 gaggagcttttctctctgcaactgttcagac----tttagtagagaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtct 340  Q
    ||||||||||||||| ||||| | |||||||     ||||| ||||||||||||||| | || |||||||||||||||||||| || ||| | ||| |||    
T  3438617 gaggagcttttctctatgcaatttttcagaccttaattagttgagaaacttgcttcatcggattttcttgattacatcaaaaataccaagttaaatatct 3438518  T
Q  341 cactcttgaggcagctgaaaacaacacttctcactctt 378  Q
    |||| ||||||| | |  | |||||||| |||||||||    
T  3438517 cacttttgaggccgttcgatacaacactgctcactctt 3438480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 201 - 347
Target Start/End: Complemental strand, 44958402 - 44958256
Alignment:
Q  201 tttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaaca 300  Q
    |||| |||||||||| | |||||||||||||||| ||||||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||    
T  44958402 tttgctttaacaataacactagaagatggctgcaactatgataggaggagcttttctatctgcaactgttcaaaccttagttgagaaacttgcttcaaca 44958303  T
Q  301 gagtttcttgattacatcaaaaacactaagctcaatgtctcactctt 347  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  44958302 gagtttcttgattacatcaaaaacaccaagatcaatgtctcactctt 44958256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 408
Target Start/End: Complemental strand, 44958265 - 44958226
Alignment:
Q  369 tctcactcttcaagttgtgctggatgatgcagaggagaag 408  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  44958265 tctcactcttcaggttgtgcttgatgatgcagaggagaag 44958226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 401
Target Start/End: Complemental strand, 146644 - 146463
Alignment:
Q  220 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 319  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| | |||||||||||||  |||||||  |||||||||||    
T  146644 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacatca 146545  T
Q  320 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 401  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| || |||||||||||||||||    
T  146544 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggtggtgctggatgatgcaga 146463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 220 - 401
Target Start/End: Complemental strand, 136593 - 136412
Alignment:
Q  220 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 319  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  136593 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 136494  T
Q  320 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 401  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| |  || || |||||||||||    
T  136493 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggttcttgatgatgcaga 136412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 381
Target Start/End: Original strand, 19956981 - 19957146
Alignment:
Q  220 tagaagatggctgcagctatgattggaggagcttttctctctgcaac-tgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatc 318  Q
    |||||||||| |||| ||||||| ||||||||||||||||| ||||| | |||| || ||||| |||||||||||||| || || ||| || |||||||     
T  19956981 tagaagatggttgcaactatgataggaggagcttttctctcagcaacctattcaaaccttagttgagaaacttgcttccacggaatttttttattacata 19957080  T
Q  319 aaaaacacta---agctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaa 381  Q
    ||||| | ||   || | ||| ||||||| ||||||||| | ||||||||||| | ||||||||||    
T  19957081 aaaaaaaatactgagttgaatatctcacttttgaggcagttaaaaacaacactccccactcttcaa 19957146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 29836112 - 29836219
Alignment:
Q  295 tcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 394  Q
    |||||||||||||  |||||| |||| ||||  ||||| |||  ||| ||||||| |||| || |||||||||||||||||||| |||  ||||| | ||    
T  29836112 tcaacagagtttcaagattacgtcaacaacatgaagctgaatcactctctcttgaagcagttgcaaacaacacttctcactcttgaagcggtgctagttg 29836211  T
Q  395 atgcagag 402  Q
    ||||||||    
T  29836212 atgcagag 29836219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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