View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_16 (Length: 400)
Name: NF18050_low_16
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 5720432 - 5720801
Alignment:
| Q |
16 |
cacagatatcaatgtgatcgatgattgaaaagtgtatgnnnnnnnaccaagtcttccgaaaaacaaatgttccttagaaggataattgatcccagtttct |
115 |
Q |
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| T |
5720432 |
cacagatgtcaatgtgatcgatgattgaaaagtgtatgtttttt-accaagtcttccgaaaaacaaatgttccttagaaggataattgatcccagtttct |
5720530 |
T |
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| Q |
116 |
taactcggtcttgatttgtgcttatattcattgtattaagaaaggaagttttggtttctaactttcttttaaaaggataagttactagacaaaaatacat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5720531 |
taactcggtcttgatttgtgcttatattcattgtattaagaaaggaagttttggtttctaactttcttttaaaaggataagttactagacaaaaatacat |
5720630 |
T |
|
| Q |
216 |
aatggatagaattcaggaactttggcacaatattaggcaactctgactttggaaatcaacatccattannnnnnnaataataaagatgcattttacatat |
315 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5720631 |
aatggatagaattcaggaactttagcacaatattaggcaactctgactttggaaatcaacatccattatttttttaataataaagatgcattttacatat |
5720730 |
T |
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| Q |
316 |
agtttgaagcttattataattgggatacttttgaggtctcttgatcacttgatgattacaaggtactaaat |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5720731 |
agtttgaagcttattataattgggatacttttgaggtctcttgatcacttgatgattacaaggtactaaat |
5720801 |
T |
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