View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_18 (Length: 379)
Name: NF18050_low_18
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 21507363 - 21507000
Alignment:
| Q |
1 |
ttgcgaccgcatcaaccacatttttccgcgatacaaagtatcacattgtagccaaaaactacaaccgcaatttaaaaccatgaaacataatattgtacta |
100 |
Q |
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| T |
21507363 |
ttgcggccgcatcaaccacatttttccgcgatacaaagtgtcacattgtagccaaaaactacaaccgcaatttaaaaccatgatacataatactgtacta |
21507264 |
T |
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| Q |
101 |
gtaccttctcacaaacatggtaaaatgtaacaatataatgacaaatcaatacataatcatagatgttaactaaattaagaatgacaatatagtacttaca |
200 |
Q |
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| T |
21507263 |
gtaccttctcacaaacatggtaaaatgtaacaatataatgacaaatcaatacataatcatagatgttaactaaattaagaatgacaatatagtacttaca |
21507164 |
T |
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| Q |
201 |
atatcaatatgagaaggagagataagtgatgagaaatgatctagttgagtatgatccatggaagagccaaacatgaaacgcttagaattagaaacaatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21507163 |
atatcaatatgagaaggagagataagtgatgataaatgatctagttgagtatgatccatggaagagccaaacatgaaacgcttagaattagaaacaacgt |
21507064 |
T |
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| Q |
301 |
taaaacaacatggaggactaagaggttcttcttgatcttcataatgttggttagaagatgatga |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21507063 |
taaaacaacatggaggactaagaggttcttcttgatcttcataatgttggttagaagatgatga |
21507000 |
T |
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