View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_2 (Length: 638)
Name: NF18050_low_2
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 28 - 622
Target Start/End: Original strand, 42236141 - 42236735
Alignment:
| Q |
28 |
agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat |
127 |
Q |
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| T |
42236141 |
agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat |
42236240 |
T |
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| Q |
128 |
caacctcaactccatcatcctcatcacaagacccaaataggacaccaaacactacacatgtcacctccattgcaagccctagcaccagtaccagcaagag |
227 |
Q |
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| T |
42236241 |
caacctcaactccatcatcatcatcacaagacccaaataggacaccaaacactacacatgtcacctccattgcaagccctagcaccagtaccagcaggag |
42236340 |
T |
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| Q |
228 |
cagtggtgaactgagatggaaatgggtggaaaactattgttggagccatggttgtttgagaagccagaatcaatgtaatgataaatgggataacttactt |
327 |
Q |
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| T |
42236341 |
cagtggtgaactgagatggaaatgggtggaaaactattgttggagccatggttgtttgagaagccagaatcaatgtaatgataaatgggataacttactt |
42236440 |
T |
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| Q |
328 |
cgtgattacaaaaaagttcgtgattatgaatccaaatcagaatcatcaccacccaacaacaatagcaacaaagatcattttccttcttattggattctca |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42236441 |
cgtgattacaaaaaagttcgtgattatgaatccaaatcagaatcatcaccacccaacaacaatagcaacaaagatcattttccttcttattggattctca |
42236540 |
T |
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| Q |
428 |
acaaacaacaacgtaaagaacaaaatcttccttctaatatggtttttgaagtttatcaagctataagtgaagttcttcaaagaaaacaatcacaaagaaa |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42236541 |
acaaacaacaacgtaaagaacaaaatcttccttctaatatggtttttgaagtttatcaagctataagtgaagttcttcaaaggaaacaatcacaaagaaa |
42236640 |
T |
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| Q |
528 |
caaccccactccactacaacaacatcagcaacaaggtttggttacattagcctcttcaccattaccagcactaccacttcaaacacagtttcttc |
622 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42236641 |
caaccccactccactacaacaacatcagcaacaaggtttggttacattagcctcttcaccattaccagcactaccacttcaaacacagtttcttc |
42236735 |
T |
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