View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18050_low_20 (Length: 353)
Name: NF18050_low_20
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_20 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 35)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 19380822 - 19381152
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19380822 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggactaattccagatgaaataggccaactag |
19380921 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19380922 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
19381021 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19381022 |
taataatttctctggtgaaatttctaaattaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
19381121 |
T |
|
| Q |
319 |
ttggattgggttcctccttttcatctctctc |
349 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
19381122 |
ttggattgggttcctccttttcaactctctc |
19381152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 19399637 - 19399967
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| ||||||||| | ||||||| ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
19399637 |
gagataccttcaagcttgctaacccttcaaaatttgaaacaccttgatctcgttgataacaaactacagggaccaattcaagatgaaataggtcaactag |
19399736 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
|||||||||||||||| | ||||||| |||||||||||||||||||||| || | |||||||||||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
19399737 |
cacatattgaatatcttggtcttgcttggaacatgttaagtggtttcattccttcaactctaggaaacctctcttccttaaattacttatctattggctc |
19399836 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
|||||||||||||||||||||||| || | | ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
19399837 |
taataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattcactagacttgagtaattcaaattttctattccagtttgat |
19399936 |
T |
|
| Q |
319 |
ttggattgggttcctccttttcatctctctc |
349 |
Q |
| |
|
|| |||||||||||||||||||| ||||||| |
|
|
| T |
19399937 |
ttagattgggttcctccttttcaactctctc |
19399967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 18146759 - 18147081
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || |||| |||| | || ||||||| |||| ||| |||||||| ||| |||||||||||| | |
|
|
| T |
18146759 |
gagataccttcaagcttgctaaaccttcaaaatttgagacaccttaatctctataataacaaactacacggatcaattccaaatggaataggccaacttg |
18146858 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
|||||||| |||| || |||||| | |||||||||||||||||||||| || | ||||||||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
18146859 |
cacatattcaataccttgatctttcatggaacatgttaagtggtttcattccttcaactctaggaaacctctcatccttaaattacttatggattggctc |
18146958 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||| |
|
|
| T |
18146959 |
taataatttctctggtgcaatttcaaaattaactttttccaacctctctagtttagattcactagacatgagtaattcaagttttgtattccaatttgat |
18147058 |
T |
|
| Q |
319 |
ttggattgggttcctccttttca |
341 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
18147059 |
ttggattgggttccaccttttca |
18147081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 147 - 348
Target Start/End: Original strand, 19375679 - 19375880
Alignment:
| Q |
147 |
gaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaa |
246 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19375679 |
gaacatgttaagtggtttcattcctttaactctaggaaacctctcatccttaaatttgttatctattggctctaataatttctctggtgaaatttctaaa |
19375778 |
T |
|
| Q |
247 |
tcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctct |
346 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19375779 |
ttaactttttccaaactctctagtttagattcactagacttgagtaattcaaattttgtattccaatttgatttggattgggttcctccttttcaactct |
19375878 |
T |
|
| Q |
347 |
ct |
348 |
Q |
| |
|
|| |
|
|
| T |
19375879 |
ct |
19375880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 25 - 349
Target Start/End: Original strand, 25462985 - 25463309
Alignment:
| Q |
25 |
ccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactagcacata |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||||| || ||| |
|
|
| T |
25462985 |
ccttcaagcttgctaaaccttcaaaatttgagacaccttgatctatctcataaccaattacagggaccaattccagatggaataggccaactaccaaata |
25463084 |
T |
|
| Q |
125 |
ttgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctctaataa |
224 |
Q |
| |
|
|| |||| || |||||| | | |||||||||| |||||| || || |||||| |||||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
25463085 |
ttcaataccttgatctttccattaacatgttaattggtttaatccctttaactataggaaacctctcatccttaacttccttatctatcggctctaataa |
25463184 |
T |
|
| Q |
225 |
tttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgatttggat |
324 |
Q |
| |
|
|||||||| | |||||| |||| |||||| |||||||||| |||||||||||| ||||||||||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
25463185 |
cttctctggggcaatttcaaaattaactttctccaaactctttagtttagattcactagacttgagtaattcaacttttgtattacaatttgatttggat |
25463284 |
T |
|
| Q |
325 |
tgggttcctccttttcatctctctc |
349 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
25463285 |
tgggttcctccttttcaactctctc |
25463309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 14896461 - 14896131
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| | || ||||||||| |||| ||||| |||| ||| ||||||||||| |||||| |||||| |
|
|
| T |
14896461 |
gagataccttcaagcttgctaaaccttcaaattttaagacaccttgatctctctaaaaacaacctacaaggatcaattccagatagaatagggcaactac |
14896362 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
|| ||||| || | || |||||| | | |||||||||||| |||||||| || | ||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
14896361 |
caaatattcaacaccttgatctttcaatgaacatgttaagcggtttcattccttcaactctaggaaacctctcatccttaatttccttatccattggctc |
14896262 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
|||||||||||||| ||||||||| || | |||||||||||||| ||||||||||| ||| |||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
14896261 |
taataatttctctgctgaaatttcaaatttaactttttccaaacactctagtttagtttcactagacatgagtaattcaaatgttgcattccaatttgat |
14896162 |
T |
|
| Q |
319 |
ttggattgggttcctccttttcatctctctc |
349 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
14896161 |
ttggattgggttcctccttttcaactctctc |
14896131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 19351324 - 19351651
Alignment:
| Q |
20 |
agatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactagc |
119 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||| || ||||||||| |||| || |||| ||| |||||||||||| |||| |||||||| | |
|
|
| T |
19351324 |
agataccttcaagcttactaaaccttcaaaaactgagacaccttgatctcaaatataaccaactacaaggatcaattccagatggaataagccaactacc |
19351423 |
T |
|
| Q |
120 |
acatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctct |
219 |
Q |
| |
|
| ||||| |||| || |||||| | |||||||||||||||||||||| || | ||||||||||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
19351424 |
aaatattcaataccttgatctttcatggaacatgttaagtggtttcattccttcaactctaggaaacctctcatccttaatttccttatcgattggctct |
19351523 |
T |
|
| Q |
220 |
aataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgatt |
319 |
Q |
| |
|
||| ||||| ||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19351524 |
aatcatttcactggtgaaatttcacaatttt-tttttccaaactctctagtttagaatggctagacttgagtaattcaaattttgtattccaatttgatt |
19351622 |
T |
|
| Q |
320 |
tggattgggttcctccttttcatctctct |
348 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
19351623 |
tggattgggttcctccttttcaactctct |
19351651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 17949757 - 17950083
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaatta----cagggaccaattccagatgaaataggccaa |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || ||||||||| || | |||||||||| || ||| ||||| |||| ||| |||||| |
|
|
| T |
17949757 |
gagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcaaataacaaattaactacaaggatcaattatagatagaattggccaa |
17949856 |
T |
|
| Q |
115 |
ctagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattg |
214 |
Q |
| |
|
||| || || ||||||| || ||| || | ||||||||| ||||| |||| || | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17949857 |
ctaccaaattttgaataccttgatatttccgcgaacatgtttggtggtctcattccttcaactctaggaaacctctcatccttatattacttatctattg |
17949956 |
T |
|
| Q |
215 |
gctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatt |
314 |
Q |
| |
|
|||||||||||||||||||| ||||||| || | | |||||||||| | | |||||||||| |||||||||||||||||||||||| || ||||||| |
|
|
| T |
17949957 |
gctctaataatttctctggtaaaatttcaaatttacatttttccaaattatttagtttagatgaactagacttgagtaattcaaattttgtaatccaatt |
17950056 |
T |
|
| Q |
315 |
tgatttggattgggttcctccttttca |
341 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
17950057 |
tgatttggattgggttcctccttttca |
17950083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 16677148 - 16677470
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||||| || ||||||| | ||| ||| || |||| | ||||||||||||||||||| ||||||| |
|
|
| T |
16677148 |
gagataccttcaagcttgttaaaccttcaacatttgagacaccttgatgtctctcaaaaccaactacaactatcaattccagatgaaataggtcaactag |
16677247 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
|||||||| || | || |||||| | | ||||||||||||||||||||| || | ||||||||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
16677248 |
cacatattcaagaccttgatctttccatgaacatgttaagtggtttcattccttcaactctaggaaacctctcatctttaaattccttatctattggcaa |
16677347 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
|||| |||||||||||||| |||| || | |||||||||||||||||||||||||||| |||||| |||| | | || | || |||||||||||||| |
|
|
| T |
16677348 |
taatgatttctctggtgaagtttcaaatttaactttttccaaactctctagtttagatatactagacctgagaagattaagtgttgtattccaatttgat |
16677447 |
T |
|
| Q |
319 |
ttggattgggttcctccttttca |
341 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
16677448 |
ttggattgggttcctccatttca |
16677470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 18165085 - 18165407
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| || |||| || ||| | | ||||| | ||| |||||||||||| ||||||||||||| |
|
|
| T |
18165085 |
gagataccttcaagcttgctaaaacttcaaaatttgcaataccttttgctagctaaaacccaattaaaaggatcaattccagatggaataggccaactaa |
18165184 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
| ||||| || || |||||| | ||||||||||||| ||||| || || | |||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
18165185 |
taaatattaaaggccttgatctttcagggaacatgttaagcggttttatcccttcgactctaggaaacctctcatccttaaatgacttatctattggctc |
18165284 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
|||||||||||||||||||||||| || | | |||| |||||||||| | ||||||||| |||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
18165285 |
taataatttctctggtgaaatttcaaatttacattttgccaaactctccaatttagattcactagacttgagtaattcaaattttgtattccaatttgct |
18165384 |
T |
|
| Q |
319 |
ttggattgggttcctccttttca |
341 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
18165385 |
ttggattgggttcctccttttca |
18165407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 174 - 348
Target Start/End: Complemental strand, 17727453 - 17727279
Alignment:
| Q |
174 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagttta |
273 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
17727453 |
aactctaggaaacctctcatctttaattttcttatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagttta |
17727354 |
T |
|
| Q |
274 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctct |
348 |
Q |
| |
|
||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17727353 |
gattcactacaattgagtaattcaaattttgcattccaatttgatttggattgggttcctccttttcaactctct |
17727279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 17941883 - 17942205
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || |||| |||| ||| |||| || |||| |||| ||||||| ||| ||||||||||||| |
|
|
| T |
17941883 |
gagataccttcaagcttgctaaaccttcaaaatttgagacacctttatctctcttataaccaactacaaggactaattccaaatggaataggccaactac |
17941982 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
|| ||||| |||| || ||||| || ||| || || | || || |||||||||||||||||||| ||| ||| ||||| |||||| || |
|
|
| T |
17941983 |
caaatattcaatacctcgatctctctgaaaacgaactacaaggatcaattcccacgactctaggaaacctctcatcattaaattggttatttattggttc |
17942082 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||| |||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
17942083 |
taataatttctctggtgaaatttcaaatttaacttttttcaaactctctagtttagactcactagacttgagtaattcaagttttgtattccaatttgat |
17942182 |
T |
|
| Q |
319 |
ttggattgggttcctccttttca |
341 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
17942183 |
ttggattgggttcctccttttca |
17942205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 174 - 348
Target Start/End: Complemental strand, 19028682 - 19028508
Alignment:
| Q |
174 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagttta |
273 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
19028682 |
aactctaggaaacctctcatctttaattttcttatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagttta |
19028583 |
T |
|
| Q |
274 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctct |
348 |
Q |
| |
|
||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19028582 |
gattcactacaattgagtaattcaaattttgcattccaatttgatttggattgggttcctccttttcaactctct |
19028508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 19333938 - 19334265
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || ||||||||| ||| |||| || |||| ||| || ||||||| |||||||||||||| |
|
|
| T |
19333938 |
gagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcttataaccaactacaaggatcagttccagaagaaataggccaacttt |
19334037 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
| |||||| || | || ||||| || ||| || || | || || | |||||||||||||||||| |||||| ||| |||| ||||||||| |
|
|
| T |
19334038 |
cccatattcaacaacttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacctctcttccttaaattacttatttattggctc |
19334137 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||| || ||||| || ||||||| ||||| |||||||| || |||||||||||||| |
|
|
| T |
19334138 |
taataatttctctggtgaaatttcaaaattaactttttccaaactctatactttaggtttgctagacatgagttattcaaatattgtattccaatttgat |
19334237 |
T |
|
| Q |
319 |
ttggattgggttcctccttttcatctct |
346 |
Q |
| |
|
||||||||| ||||||||||||| |||| |
|
|
| T |
19334238 |
ttggattggattcctccttttcaactct |
19334265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 19437047 - 19437217
Alignment:
| Q |
179 |
taggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattc |
278 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
19437047 |
taggaaacctctcatccttaagttacctatctattggttctaataatttctctggtgaaatttcaaaattaactttttccaaactctctagtttagattg |
19437146 |
T |
|
| Q |
279 |
gctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctctc |
349 |
Q |
| |
|
||| |||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
19437147 |
gctcgacttgagcaattcaaattttgtattcaaatttgatatggattgggttcctccttttcaactctctc |
19437217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 105 - 341
Target Start/End: Original strand, 19424702 - 19424938
Alignment:
| Q |
105 |
aataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttg |
204 |
Q |
| |
|
|||||||||||||||||||||| || || |||||| | | || |||||||||||||| || || | |||| |||||||||||||||| ||| || |
|
|
| T |
19424702 |
aataggccaactagcacatattcaaagccttgatctttcaaacaatatgttaagtggtttaattccttcaactttaggaaacctctcatcattaaatcac |
19424801 |
T |
|
| Q |
205 |
ttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttt |
304 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
19424802 |
ttatggattggctctaataaattctcaggtgaaatttcaaaattaactttttccaaactctctagtttagaagaactagacttgagtaattcaacttttg |
19424901 |
T |
|
| Q |
305 |
tattccaatttgatttggattgggttcctccttttca |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19424902 |
tattccaatttgatttggattgggttcctccttttca |
19424938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 18108368 - 18108695
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || ||||||||| || | |||| || |||| ||| ||||| |||| ||| ||||||| |
|
|
| T |
18108368 |
gagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcaaataaccaactacaaggatcaattatagatagaatttcccaactac |
18108467 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
|| || || |||| || ||| | | ||||||||| |||||| |||| || | |||| ||||||||||||| |||||| | |||| ||||||||| |
|
|
| T |
18108468 |
caaattttcaataccttgatatatccgcgaacatgtttagtggtctcattccttcaactgtaggaaacctctcttccttaaagcacttatttattggctc |
18108567 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
||||||||||||||| |||||||| || | | ||||||||| ||||||| |||| ||| |||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
18108568 |
taataatttctctggcgaaatttcaaatttacatttttccaatctctctactttattttcactagacttgagtaattcaaattttgtattccagtttgat |
18108667 |
T |
|
| Q |
319 |
ttggattgggttcctccttttcatctct |
346 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
18108668 |
ttggattgggttcctccttttcaactct |
18108695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 19393078 - 19393408
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| | |||| |||| | | || || |||| ||| |||||| ||||| |||||||||||| | |
|
|
| T |
19393078 |
gagataccttcaagtttgctaaaccttcaaaatttgagataccttaatctctttgaaaatcaactacaaggatcaattcaagatggaataggccaacttg |
19393177 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
|||| || |||| || ||| || | | |||||||| |||||||| || || | |||| |||||||||||||||||||| ||| ||||||||| || |
|
|
| T |
19393178 |
aacatcttcaataccttgatgtttcgaaaaacatgttgagtggttttattccttcaactttaggaaacctctcatccttaaattacttatctattagcga |
19393277 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
||| |||||||||||||||||||| || | | ||||||||||||| |||||||| ||| ||| ||||||||||||||| |||| ||||||||||||| |
|
|
| T |
19393278 |
taacaatttctctggtgaaatttcaaatttacatttttccaaactccatagtttagtttcactaaacttgagtaattcaatttttgaattccaatttgat |
19393377 |
T |
|
| Q |
319 |
ttggattgggttcctccttttcatctctctc |
349 |
Q |
| |
|
||| ||||||||||||||||||| ||||||| |
|
|
| T |
19393378 |
ttgaattgggttcctccttttcaactctctc |
19393408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 174 - 349
Target Start/End: Original strand, 18103430 - 18103605
Alignment:
| Q |
174 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagttta |
273 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||| || | |||||||||||||| ||||||| |
|
|
| T |
18103430 |
aactctaggaaacctctcatccttaaattacttatttattggctctaataatttctctggtaaaatttcaaatttgcatttttccaaactctgtagttta |
18103529 |
T |
|
| Q |
274 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctctc |
349 |
Q |
| |
|
||| |||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
18103530 |
gatgaactagacttgagtaactcaaattttgtattccaatttgatatggattgggtacctccttttcaactctctc |
18103605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 174 - 341
Target Start/End: Original strand, 18016106 - 18016273
Alignment:
| Q |
174 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagttta |
273 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
18016106 |
aactctaggaaacctgtcatccttaatttccttatcgattggctctaataatttctctggtgaaatttcacaattttttttttccaaactctctagttta |
18016205 |
T |
|
| Q |
274 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttca |
341 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18016206 |
aatcatttagacttgagtaattcaaattttgaattccaatttgatttggattgggttcctccttttca |
18016273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 178 - 349
Target Start/End: Original strand, 19464444 - 19464615
Alignment:
| Q |
178 |
ctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagatt |
277 |
Q |
| |
|
||||||||||||||||| ||| || |||||||| |||||||| |||||||| ||||||||||| || | ||||||||||||||||||||||||| ||| |
|
|
| T |
19464444 |
ctaggaaacctctcatctttaaatgacttatctatcggctctaacaatttctcaggtgaaatttcaaatttaactttttccaaactctctagtttacatt |
19464543 |
T |
|
| Q |
278 |
cgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctctc |
349 |
Q |
| |
|
||||||||||||||||||||||| | | |||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19464544 |
atttagacttgagtaattcaaattttgtctcccaaattgatttggattgggttcctccttttcaactctctc |
19464615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 19414113 - 19414442
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || ||||||||| || | |||| || |||| || || ||||||||| ||||||| || ||| |
|
|
| T |
19414113 |
gagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctatcaaataaccaactacaagggtcagttccagatggaataggcaaattag |
19414212 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
|||||||| || | || ||||| || ||| || || ||||| | | |||||||||||| ||| |||||||| ||| ||||||||||| || |
|
|
| T |
19414213 |
cacatattcaacacctcgatctctctgaaaaccaactacaaggattcattctttcaactctaggaaatctcccatccttaaattacttatctattggttc |
19414312 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
||||||||||||||| | |||| || | | |||||||||||||||||||||| || ||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
19414313 |
gaataatttctctggtaatattttaaatttatatttttccaaactctctagtttaaatcatctagacttgagtaattcaagttttgttttccaatttgat |
19414412 |
T |
|
| Q |
319 |
ttggattgggttcctccttttcatctctct |
348 |
Q |
| |
|
|||||||||||||| |||||||| |||||| |
|
|
| T |
19414413 |
ttggattgggttcccccttttcaactctct |
19414442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 174 - 347
Target Start/End: Original strand, 18116049 - 18116222
Alignment:
| Q |
174 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagttta |
273 |
Q |
| |
|
|||||||||||| ||||| ||| || ||| |||||||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||||| |
|
|
| T |
18116049 |
aactctaggaaatctctcttccctaaattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta |
18116148 |
T |
|
| Q |
274 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctc |
347 |
Q |
| |
|
||| ||||||||| |||||||| ||||| || |||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
18116149 |
gatcatctagacttgcgtaattcagattttgtaatccagattgatttggattgggttcctccctttcaactctc |
18116222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 340
Target Start/End: Original strand, 18144284 - 18144440
Alignment:
| Q |
184 |
aacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctag |
283 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||| |||||||||||||||||||| || | | ||||||||||||||||||||||| | ||| |
|
|
| T |
18144284 |
aacctctcttccttaatttacttatctattggctctaacaatttctctggtgaaatttcaaatttacatttttccaaactctctagtttagttgtactat |
18144383 |
T |
|
| Q |
284 |
acttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttc |
340 |
Q |
| |
|
| |||| |||||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18144384 |
agatgaggaattcacgttttgtattccaatttgatttggattaggttcctccttttc |
18144440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 19461616 - 19461712
Alignment:
| Q |
174 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagt |
270 |
Q |
| |
|
|||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||| |
|
|
| T |
19461616 |
aactctaggaaacctctcttccctaaattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagt |
19461712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 19436959 - 19437050
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaatagg |
110 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| || ||||||||| ||| |||| || |||| ||| |||||||||||| |||||| |
|
|
| T |
19436959 |
gagataccttctagcttgctaaaccttcaaaatttgagacaccttgatctctcttataaccaactacaaggatcaattccagatggaatagg |
19437050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 18103347 - 18103426
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattcc |
98 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || ||||||||| ||| |||| || |||| ||| ||||||| |
|
|
| T |
18103347 |
gagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcttataaccaactacaaggatcaattcc |
18103426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 18115894 - 18116001
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| | |||| |||| || |||| || |||| | | |||||||||| |||||||||||||| | |
|
|
| T |
18115894 |
gagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctcctataaccaactacaagaatcaattccagaagaaataggccaacttg |
18115993 |
T |
|
| Q |
119 |
cacatatt |
126 |
Q |
| |
|
| |||||| |
|
|
| T |
18115994 |
cccatatt |
18116001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 19424551 - 19424639
Alignment:
| Q |
25 |
ccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggcca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| ||| ||| || || | ||| |||||||||||| ||||||||| |
|
|
| T |
19424551 |
ccttcaagcttgctaaaccttcaaaatttgacataccttgatctctctgaaaaccaactataaggatcaattccagatggaataggcca |
19424639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 17727568 - 17727501
Alignment:
| Q |
59 |
tccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactagcacatatt |
126 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
17727568 |
tccttgatctctctcataaccaattacagggaccaattccatatgggataggccaacttgcacatatt |
17727501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 19028797 - 19028730
Alignment:
| Q |
59 |
tccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactagcacatatt |
126 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
19028797 |
tccttgatctctctcataaccaattacagggaccaattccatatgggataggccaacttgcacatatt |
19028730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 19461461 - 19461568
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| | |||| |||| ||| |||| || |||| | | || ||||| | |||||||||||||| | |
|
|
| T |
19461461 |
gagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctcttataaccaactacaagaatcagttccaaaagaaataggccaacttg |
19461560 |
T |
|
| Q |
119 |
cacatatt |
126 |
Q |
| |
|
| |||||| |
|
|
| T |
19461561 |
cccatatt |
19461568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 19375623 - 19375675
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttc |
71 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
19375623 |
gagataccttcaagcttgctaaaccttccaaatttgagacaacttgatctttc |
19375675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 18016023 - 18016059
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttga |
55 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
18016023 |
gagataccttctagcttgctaaaccttcaaaatttga |
18016059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 24493373 - 24493421
Alignment:
| Q |
191 |
catccttatatttgttatctattggctctaataatttctctggtgaaat |
239 |
Q |
| |
|
||||||||| || |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
24493373 |
catccttatcttacttatctattgcctctaataatttctcaggtgaaat |
24493421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 104 - 341
Target Start/End: Original strand, 15535547 - 15535784
Alignment:
| Q |
104 |
aaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatattt |
203 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||||| || | ||||||||||||||||||||||||| ||| |
|
|
| T |
15535547 |
aaataggccaactagcacatattcaatatcttgatctttctaggaacatgttaagttctttcattccttcaactctaggaaacctctcatccttaaattc |
15535646 |
T |
|
| Q |
204 |
gttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttt |
303 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| || ||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
15535647 |
cttatctattggatctaataatttatctggtgcaaattcaaaattaactttttccaaactctctggtttagattcactagacttgagtaattcaaatttt |
15535746 |
T |
|
| Q |
304 |
ttattccaatttgatttggattgggttcctccttttca |
341 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15535747 |
gtattccaattttatttggattgggttcctccttttca |
15535784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 2710647 - 2710319
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| ||||| |||||| |||| |||| |||||||| || ||| ||||||||| |||| || |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
2710647 |
gagataccttctagcttgttaaagcttcgaaatttgagacaactttatctttctaataaccaactacaaggaccaattcaagatgaaataggccaactag |
2710548 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
|| ||||| |||| || |||||| | | |||||||||||| |||||||| || | ||||||||||||||||||||||||| | | ||| ||||||| | |
|
|
| T |
2710547 |
catatattcaataccttgatctttccatgaacatgttaagcggtttcattccttcaactctaggaaacctctcatccttaaagtccttacttattggcac |
2710448 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
|||| |||| |||||||||||||| || | |||||||||||||||||||||||||||||| |||||| |||||| ||||| || | |||||||||||||| |
|
|
| T |
2710447 |
taatcatttttctggtgaaatttcaaatttaactttttccaaactctctagtttagattcactagacgtgagtagttcaacttgtgtattccaatttgat |
2710348 |
T |
|
| Q |
319 |
ttggattgggttcctccttttcatctctc |
347 |
Q |
| |
|
||| ||||||||||||||||||| ||||| |
|
|
| T |
2710347 |
ttgaattgggttcctccttttcaactctc |
2710319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 15532280 - 15532369
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaata |
108 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||| | |||||||||| |||| |||| || |||| ||| ||||||||||| ||||| |
|
|
| T |
15532280 |
gagataccttcaagtttgctaaatcttcaaaatttgagaatccttgatctctctaataaccaactacaaggatcaattccagataaaata |
15532369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 31 - 340
Target Start/End: Complemental strand, 4162 - 3853
Alignment:
| Q |
31 |
agcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactagcacatattgaat |
130 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||| ||| || |||| ||| || || || ||| |||||| ||||||||| ||||| || |
|
|
| T |
4162 |
agcttgctaaaccttcaaaatttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaataggtcaactagcaaatattcaac |
4063 |
T |
|
| Q |
131 |
atctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctctaataatttctc |
230 |
Q |
| |
|
| || |||||| | | |||||||||||||||||||| || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
4062 |
accttgatctttccatcaacatgttaagtggtttcattcctgtaactctaggaaacctctcatccttacattccttatctattggctctaataatttctc |
3963 |
T |
|
| Q |
231 |
tggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggtt |
330 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||| ||||||||||||||||||| |
|
|
| T |
3962 |
tggtgaaatttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgtattccgatttgatttggattgggtt |
3863 |
T |
|
| Q |
331 |
cctccttttc |
340 |
Q |
| |
|
|||||||||| |
|
|
| T |
3862 |
cctccttttc |
3853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 31 - 340
Target Start/End: Complemental strand, 3632 - 3323
Alignment:
| Q |
31 |
agcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactagcacatattgaat |
130 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||| ||| || |||| ||| || || || ||| |||||| ||||||||| ||||| || |
|
|
| T |
3632 |
agcttgctaaaccttcaaaatttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaataggtcaactagcaaatattcaac |
3533 |
T |
|
| Q |
131 |
atctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctctaataatttctc |
230 |
Q |
| |
|
| || |||||| | | |||||||||||||||||||| || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
3532 |
accttgatctttccatcaacatgttaagtggtttcattcctgtaactctaggaaacctctcatccttacattccttatctattggctctaataatttctc |
3433 |
T |
|
| Q |
231 |
tggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggtt |
330 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||| ||||||||||||||||||| |
|
|
| T |
3432 |
tggtgaaatttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgtattccgatttgatttggattgggtt |
3333 |
T |
|
| Q |
331 |
cctccttttc |
340 |
Q |
| |
|
|||||||||| |
|
|
| T |
3332 |
cctccttttc |
3323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 5332 - 5653
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||| || |||||||| ||| ||| || |||| ||| || || || ||| |||||| ||||||| |
|
|
| T |
5332 |
gagataccttctagcatgctaaaccttcaaaatttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaataggtcaactag |
5431 |
T |
|
| Q |
119 |
cacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctc |
218 |
Q |
| |
|
|| ||||| || | || |||||| | | ||||||||| |||||||||| || |||||||||||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
5432 |
caaatattcaacaccttgatctttccatcaacatgttaggtggtttcattcctgtaactctaggaaacctctcatccttacattccttatctactggctc |
5531 |
T |
|
| Q |
219 |
taataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgat |
318 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||||||||||||||||||||| ||| ||||||||||||||||| || |||| | ||||||| |
|
|
| T |
5532 |
taataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgtatttcgatttgat |
5631 |
T |
|
| Q |
319 |
ttggattgggttcctccttttc |
340 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5632 |
ttggattgggttcctccttttc |
5653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 174 - 348
Target Start/End: Complemental strand, 13666866 - 13666692
Alignment:
| Q |
174 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagttta |
273 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||| |
|
|
| T |
13666866 |
aactctaggaaacctctcatccttaaattacttatctattagctctaataatttctctggtgaaatttcaaatttaactttttctaaactctctagttta |
13666767 |
T |
|
| Q |
274 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctct |
348 |
Q |
| |
|
|| | ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
13666766 |
gacacactatgcttgagtaattcaaagcttgtattccaatttgatttggattgggttcctcctttttaactctct |
13666692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 92 - 341
Target Start/End: Original strand, 8459550 - 8459799
Alignment:
| Q |
92 |
caattccagatgaaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctc |
191 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| |||| || |||||| | | |||||||||||||||||||| || | ||||| ||||||||||| |
|
|
| T |
8459550 |
caattccgtatggaataggccaactagcacatattcaataccttgatctttccaaaaacatgttaagtggtttcattccttctactcttggaaacctctc |
8459649 |
T |
|
| Q |
192 |
atccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagt |
291 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||| |||||||||| || ||| ||||||||||||| |||| ||| || |||||||| ||| |
|
|
| T |
8459650 |
atccttatattccttatctattggctcaaataacttctctagtgaaatttcaaacagaaccttttccaaactctatagtctaggttttctagacttaagt |
8459749 |
T |
|
| Q |
292 |
aattcaaattttttattccaatttgatttggattgggttcctccttttca |
341 |
Q |
| |
|
| || |||| || |||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
8459750 |
agtttaaatattgtatttcaattcgatttggattgggttcctccatttca |
8459799 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 8459405 - 8459527
Alignment:
| Q |
19 |
gagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactag |
118 |
Q |
| |
|
|||||||||||||||||| || |||||| |||||||| || ||||||||| ||| |||| || |||| ||| |||||||| ||| ||| ||||||||| |
|
|
| T |
8459405 |
gagatgccttcaagcttgttataccttccaaatttgagacaccttgatctctcttataaccaactacaaggatcaattccaaatggaatccgccaactag |
8459504 |
T |
|
| Q |
119 |
cacatattgaatatctggatctt |
141 |
Q |
| |
|
||||||| |||| || |||||| |
|
|
| T |
8459505 |
aacatattaaataccttgatctt |
8459527 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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