View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_21 (Length: 344)
Name: NF18050_low_21
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 30768037 - 30767722
Alignment:
| Q |
18 |
caaagattctaattagaaacgattagaagnnnnnnntataattaagtatcattagcttcatacttatggacttaaagaaaagcttcaaacttatgaatat |
117 |
Q |
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| T |
30768037 |
caaatattctaattagaaacgattagaagaaaaatatataattaagtatcattagcttcatacttatggacgtaaagaaaagcttcagacttatgaatat |
30767938 |
T |
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| Q |
118 |
caagctaacatcacaaatttgttatatacataaacaaacaagccaagcaaatcaatcatnnnnnnncataatagtgattacttgttggagaggtaacgta |
217 |
Q |
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| T |
30767937 |
caagctaacatcagaaatttgttatatacataaacaaacaagccaagcaaatcaatc-ttaaaaaacataatagtgattacttgttggagaggtaacgta |
30767839 |
T |
|
| Q |
218 |
tcaaataagagtaggaaaaaattgaacgaaaaagtagtacaggatatgtaaatatgagagtttatttaggcagaaaagaatattaatattaaaccttgtt |
317 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30767838 |
tcaaataagagtagcaaaaaattgaaccaaaaagtagtacaggatatgtaaatatgagagtttatttaggcagaaaagaatattaatattaaaccttgtt |
30767739 |
T |
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| Q |
318 |
tgtgaacggctcctatg |
334 |
Q |
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||||||||||||||||| |
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| T |
30767738 |
tgtgaacggctcctatg |
30767722 |
T |
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