View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18050_low_22 (Length: 298)
Name: NF18050_low_22
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 6 - 283
Target Start/End: Complemental strand, 4128598 - 4128323
Alignment:
| Q |
6 |
gtggcaatcaaatcaatatcactggagaaacactccaaagtggatcaactcttaaagtaaaaggtatcactgcatcacaggtacgtaattaaattaatgc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4128598 |
gtggcaatcaaatcaatatcactggagaaacactccaaagtggatcaactcttgaagtaaaaggtatcactgcatcacaggtacgtaattaaactaatgc |
4128499 |
T |
|
| Q |
106 |
atgttgtgtgttttttcttatgaagcacgaacacgggacatgacacttatattaacacttgtaaacatttgtaaacataaatgattaaatgtaacttact |
205 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
4128498 |
atgttgtgt--tttttcctatgaagcacgaacacgggacatgacacttatattaacacttgtaaacacttgtaaacataaacgattaaatgtaacttact |
4128401 |
T |
|
| Q |
206 |
atatgtgtcgttgtcatgtcattgtcaaatactaacacatgtcagactcgccagccgtcgatttgaatggttggtgtt |
283 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4128400 |
atatgtgtcgctgtcatgtcattgtcaaatactaacacatgtcagactcgccagccgtcgatttgaatggttggtgtt |
4128323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 4137211 - 4137098
Alignment:
| Q |
6 |
gtggcaatcaaatcaatatcactggagaaacactccaaagtggatcaactcttaaagtaaaaggtatcactgcatcacaggtacgtaattaaattaatgc |
105 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || |||| | || | |
|
|
| T |
4137211 |
gtggcaaacaaatcaatatcaccggagaaacactccaaagtggatcaactcttgaagtaaaaggtatcactgcatctcaggtacacaactaaactgattc |
4137112 |
T |
|
| Q |
106 |
atgttgtgtgtttt |
119 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4137111 |
atgttgtgtgtttt |
4137098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 4142279 - 4142137
Alignment:
| Q |
10 |
caatcaaatcaatatcactggagaaacactccaaagtggatcaactcttaaagtaaaaggtatcactgcatcacaggtacgtaattaaattaatgcatgt |
109 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
4142279 |
caatcaaatcaatatcactagagagacactcctaagtggatcaactcttgaagtaataggtatcactgcatctcaggtacgtaattaaatcgatgcatgc |
4142180 |
T |
|
| Q |
110 |
tgtgtgttttttcttatgaagcacgaacacgggacatgacact |
152 |
Q |
| |
|
| || ||||| || || |||| || |||| ||||||||||| |
|
|
| T |
4142179 |
tatgagttttctcctacgaagtacagacacaagacatgacact |
4142137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University