View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18050_low_24 (Length: 282)
Name: NF18050_low_24
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 32248546 - 32248292
Alignment:
| Q |
18 |
ggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggagatggaatgttgtccttattgagaagaggtttggaacttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32248546 |
ggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtagaaggagatggaatgttgtccttattgagaagaggtttggaatttc |
32248447 |
T |
|
| Q |
118 |
ccttcaatgaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatc---ttggtgaaggaaatgcttttgagcatgactagcaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32248446 |
ccttcaatgaggtaatgtagaagttgcttctttttttataagtcttttttgatgtaccatctaattggtgaaggaaatgcttttgagcatggctagcaac |
32248347 |
T |
|
| Q |
215 |
ttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttcccttc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32248346 |
ttgacttgcagttcttgtacgaacatgttgtgaaatcattttccaatttcccttc |
32248292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 32236352 - 32236098
Alignment:
| Q |
18 |
ggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggagatggaatgttgtccttattgagaagaggtttggaacttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32236352 |
ggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtagaaggagatggaatgttgtccttattgagaagaggtttggaatttc |
32236253 |
T |
|
| Q |
118 |
ccttcaatgaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatc---ttggtgaaggaaatgcttttgagcatgactagcaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32236252 |
ccttcaatgaggtaatgtagaagttgcttctttttttataagtcttttttgatgtaccatctaattggtgaaggaaatgcttttgagcatggctagcaac |
32236153 |
T |
|
| Q |
215 |
ttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttcccttc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
32236152 |
ttgacttgcagttcttgtacgaacatgttgtgaaatcagtttccactttcccttc |
32236098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 32254733 - 32254509
Alignment:
| Q |
26 |
gttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggag---atggaatgttgtccttattgagaagaggtttggaacttcccttc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||| |||||| ||| ||| |
|
|
| T |
32254733 |
gttgtccttatagagaagagggtggaaatttccatcccatgtaggaggaggaggggatggaatgttgtccttatagagaagagggttggaatctccattc |
32254634 |
T |
|
| Q |
123 |
aatgaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatcttggtgaaggaaatgcttttgagcatgactagcaacttgacttg |
222 |
Q |
| |
|
||||||||||||| ||||||||| | ||| |||||||||||| || || |||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
32254633 |
aatgaggtaatgtcaaagttgctt---tttcttttagttttttttgatgtagcactatgatgaaggaaatgcttttgatcatggctaccaacttgacttg |
32254537 |
T |
|
| Q |
223 |
cagttcttgtacgaacatgttgtgaaat |
250 |
Q |
| |
|
|||| |||||| || ||||| |||||| |
|
|
| T |
32254536 |
gagtttttgtactaagatgttctgaaat |
32254509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 37027805 - 37027885
Alignment:
| Q |
188 |
gaaatgcttttgagcatgactagcaacttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttccctt |
268 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| |||| |||||| ||||||||||| ||||||| |||| |||||||| |
|
|
| T |
37027805 |
gaaatgcttttgagcatggctagcaacttgagttgtagtttttgtaccaacatgttgtgcaatctttatccattttccctt |
37027885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 23193963 - 23193907
Alignment:
| Q |
22 |
catagttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggag |
78 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
23193963 |
catagttttccttatagagaagaggttggaaatttccatcccataaggtatgaggag |
23193907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 37027682 - 37027724
Alignment:
| Q |
26 |
gttgtccttatagagaagagggtggaaatttccatcccatgag |
68 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
37027682 |
gttgtccctatagagaagagggtgaaaatttccatcccatgag |
37027724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 23193803 - 23193760
Alignment:
| Q |
179 |
ttggtgaaggaaatgcttttgagcatgactagcaacttgacttg |
222 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
23193803 |
ttggtgaaggaaagtcttttgagcatggctagcaacttgacttg |
23193760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University