View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_25 (Length: 281)
Name: NF18050_low_25
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 5281011 - 5281277
Alignment:
| Q |
1 |
ttgtcgaaaatgaccaacaataactgagattagctaatgcccaaataggctgctaagaatgttacaaaccatcgagaaacaagacaaatgtggggcacta |
100 |
Q |
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| T |
5281011 |
ttgtcgaaaatgaccaacaatagctgagattagctaatgcccaaatagactgctaagaatgttacaaaccatggagaaacaagacaaatgtggggcacta |
5281110 |
T |
|
| Q |
101 |
catatactcattaactaacacggacatgcaccttactcgcaagtttaatcaaattgcaatagttagcgctagactttgtaggccagaatgcctggccaat |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5281111 |
catatactcattaactaacacgggcatgcaccttactcgcaagtttaatcaaattgcaatagttagcgctagactttgtaggccagaatgcctggccaat |
5281210 |
T |
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| Q |
201 |
aagattcgtgttatttctataaatatttattgtagatatcattatcaacgcacaatatcaaattaaa |
267 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5281211 |
aagattcgtgttatttctataaatatttattgtaaatatcattatcaacgcacaatatcaaattaaa |
5281277 |
T |
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