View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_3 (Length: 539)
Name: NF18050_low_3
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 13 - 525
Target Start/End: Complemental strand, 32961280 - 32960768
Alignment:
| Q |
13 |
gaacaaacacacgcaatgatgacccaataaaaatgctatagaaagtaaaacatcatgtaaactttatgtctaattgaagtaaaagaaagaaacaaatgat |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32961280 |
gaacaaacacacacaatgatgacccaataaaaatgctatagaaagtaaaacatcatgtaaactttatgtctaattgaagtaaaagaaagaaacaaatgat |
32961181 |
T |
|
| Q |
113 |
cattaataaagtctcattaagaggaatacagaagaaaacacaaagatacaatagtgnnnnnnncaaacacatgaaaaaggaacatagctagcttttcttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32961180 |
cattaataaagtctcattaagaggaatacagaagaaaacacaaagatacaatagtgaaaaaaacaaacacatgaaaaaggaacatagctagcttttcttc |
32961081 |
T |
|
| Q |
213 |
ctagatacaaattctaatttttcttccaaacattcactccataaaggtctccataacatctgagtacatacctcctccttccgaattcctatactccaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32961080 |
ctagatacaaattctaatttttcttccaaacatttactccataaaggtctccataacatctgagtacatacctcctccttctgaattcctatactccaca |
32960981 |
T |
|
| Q |
313 |
ccttgttgttgttgatgatgatccattgaagtagatgaagatgatgaagccactcttgtaggtaaagtgaagcttctcttaaacttgtccatttttcttc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32960980 |
ccttgttgttgttgatgatgatccattgaagtagatgaagatgatgaagccactcttgtaggtaaagtgaagcttctcttaaacttgtccatttttcttc |
32960881 |
T |
|
| Q |
413 |
caccttcatggtgactatccaagctcaaaaactcatttgggttcgaaccatctgaattaggattttgattaagagtgtgatgatgttgattatgatcatg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32960880 |
caccttcatggtgactatccaagctcaaaaactcatttgggttcgaaccatctgaattaggattttgattaagagtgtgatgatgttgattatgatcatg |
32960781 |
T |
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| Q |
513 |
atcaccttgtttt |
525 |
Q |
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||||||||||||| |
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| T |
32960780 |
atcaccttgtttt |
32960768 |
T |
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