View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_5 (Length: 522)
Name: NF18050_low_5
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Original strand, 7999408 - 7999912
Alignment:
| Q |
18 |
gaaaagcaattttctagtattcagtcatattattagcccatgcaaaactatcgtgcttccgaagaagaaccctaacactcccattccctcgattcgattc |
117 |
Q |
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| T |
7999408 |
gaaaagtaattttctagtattccgtcatattattagcccatgcaaaactatcgtgcttccgaagaagaaccctaacattcccattccctcgattcgattc |
7999507 |
T |
|
| Q |
118 |
tcgacccaactccaatcctttctggattcagtgagctcttcaattttgtattctctctcaa----------ttcaattcattttctgattgtaatttggg |
207 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7999508 |
tcgacccaactccaatcctttctggattcagcgagcacttcaattttgtattctctctcaattcaattcaattcaattcattttctgattgtaatttggg |
7999607 |
T |
|
| Q |
208 |
atttaggttttgtttgctgcaacatgtctgatgaacgattgacgcgtattgccatcgttaacaacgacaaatgcaaaccgaaaaagtgccgtcaagagtg |
307 |
Q |
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| T |
7999608 |
atttaggttttgtttgctgcaacatgtctgatgaacgattgacgcgtattgccatcgttaacaacgacaaatgcaaaccgaaaaagtgtcgtcaagagtg |
7999707 |
T |
|
| Q |
308 |
caagaagagttgtcctgtcgtcggaaccggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgc |
407 |
Q |
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| T |
7999708 |
caagaagagttgtcctgtcgtcggaaccggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgc |
7999807 |
T |
|
| Q |
408 |
ggtatttgtgttaaggtattattattctattcattaacttttttaaagatgctcgcttttgttaatacttaataatgaataatgggtttggtttatgtga |
507 |
Q |
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| T |
7999808 |
ggtatttgtgttaaggtattattattctattcattcacttttttaaagatgctcgcttttgttaatacttaataatgaataatgggtttggtttatgtga |
7999907 |
T |
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| Q |
508 |
tgatg |
512 |
Q |
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||||| |
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| T |
7999908 |
tgatg |
7999912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 133 - 452
Target Start/End: Complemental strand, 7909048 - 7908721
Alignment:
| Q |
133 |
tcctttctggattcagtgagctcttcaattttgtattctctctcaattcaattc-----attttctgattgtaatttgggatttaggttttgtttgctgc |
227 |
Q |
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|||||||| ||||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
7909048 |
tcctttctcgattcggtaagctcttcaattttgtatttactctcaattcaattcgattcattttctgattgtaatttgggatttaggttttatttgctgc |
7908949 |
T |
|
| Q |
228 |
aacatgtctgatgaacgattgacgcgtattgccatcgttaacaacgacaaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcg |
327 |
Q |
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| T |
7908948 |
aacatgtctgatgaacgatcgatgcgtactgccttcgttaacaacgacaaatgcagaccgctaaagtgtcatcaagagtgccagatgatttgtcctgtcg |
7908849 |
T |
|
| Q |
328 |
tcggaaccggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtatt |
427 |
Q |
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| T |
7908848 |
tcataattggaaaatcatgtgttgaggttactcctgagtccaagattgcttacatatctgaggaattgtgcattggatgccgtatgtgtgttaaggtatt |
7908749 |
T |
|
| Q |
428 |
a-ttattc--tattcattaactttttta |
452 |
Q |
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| T |
7908748 |
atttattcattattcattcactttttta |
7908721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 243 - 337
Target Start/End: Original strand, 51514623 - 51514717
Alignment:
| Q |
243 |
cgattgacgcgtattgccatcgttaacaacgacaaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcgtcggaaccgg |
337 |
Q |
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| T |
51514623 |
cgattgacacgtattgccatcgttagcaacgacagatgcaaacccaaaaagtgtcgtcaagaatgtaagaagagttgtcctgtcgtcagaaccgg |
51514717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 336 - 430
Target Start/End: Original strand, 51514830 - 51514924
Alignment:
| Q |
336 |
ggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtattatt |
430 |
Q |
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| T |
51514830 |
ggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattggatgtggtatctgtgttaaggtattatt |
51514924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 51514550 - 51514590
Alignment:
| Q |
178 |
attcaattcattttctgattgtaatttgggatttaggtttt |
218 |
Q |
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| T |
51514550 |
attccattcagtttctgattgtaatttgggatttaggtttt |
51514590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 336 - 427
Target Start/End: Complemental strand, 1304674 - 1304583
Alignment:
| Q |
336 |
ggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtatt |
427 |
Q |
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| T |
1304674 |
ggaaaattgtgtattgaggttaattctgcatcgaagattgcttacctatccgaggaattgtgcaatggatgtggtatttgtgttaaggtatt |
1304583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 1304866 - 1304784
Alignment:
| Q |
247 |
tgacgcgtattgccatcgttaacaacgacaaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcgtc |
329 |
Q |
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| T |
1304866 |
tgacgcgtattgccattgtcaatgaagacagatgcaagccgaaaaagtgtcgacaggagtgtaagaagagttgccctgtcgtc |
1304784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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