View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18050_low_7 (Length: 494)

Name: NF18050_low_7
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18050_low_7
NF18050_low_7
[»] chr1 (5 HSPs)
chr1 (124-479)||(36755455-36755810)
chr1 (193-300)||(26331415-26331521)
chr1 (193-240)||(20817829-20817876)
chr1 (226-263)||(42825588-42825625)
chr1 (194-241)||(10650045-10650092)
[»] chr6 (2 HSPs)
chr6 (194-342)||(33545813-33545969)
chr6 (193-261)||(12991655-12991724)
[»] chr7 (3 HSPs)
chr7 (184-286)||(31270662-31270765)
chr7 (184-241)||(11693611-11693668)
chr7 (193-241)||(24677032-24677080)
[»] chr5 (6 HSPs)
chr5 (195-241)||(22641951-22641997)
chr5 (193-241)||(25955067-25955115)
chr5 (193-263)||(36463269-36463339)
chr5 (191-264)||(15991078-15991153)
chr5 (184-240)||(16192782-16192838)
chr5 (183-243)||(17772135-17772195)
[»] chr4 (5 HSPs)
chr4 (193-241)||(1186254-1186302)
chr4 (309-359)||(9855971-9856021)
chr4 (176-248)||(17651862-17651935)
chr4 (196-286)||(24716395-24716486)
chr4 (307-342)||(17651761-17651796)
[»] chr8 (1 HSPs)
chr8 (194-248)||(3318615-3318670)
[»] chr3 (2 HSPs)
chr3 (219-262)||(2905740-2905783)
chr3 (184-240)||(55212556-55212611)
[»] scaffold0466 (1 HSPs)
scaffold0466 (193-241)||(5191-5239)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 124 - 479
Target Start/End: Complemental strand, 36755810 - 36755455
Alignment:
Q  124 taattatcctggttcatcccataattcaaggctagctcaatctccttcatgttccaacgaattttctattataatcacacaagattacaattacctagac 223  Q
    ||||||||||| |||| || |||||| |||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  36755810 taattatcctgattcaccctataattaaaggctagctcagtctccttcatgttccaaccaaatttctattataatcacacaagattacaattacctagac 36755711  T
Q  224 acacaagtctaagatttcttgcctctcctagaggacttcttgaaatcagagtttacaactaaaattgttttatgtttagacctagagagtggtaaactaa 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36755710 acacaagtctaagatttcttgcctctcctagaggacttcttgaaatcagagtttacaactaaaattgttttatgtttagacctagagagtggtaaactaa 36755611  T
Q  324 cttaaagctcaatagacttaaaaacacttaagaaatcttaacatagaaaaattataagaattgtctaagtgtgtgtgctatataatttatcaaagttttg 423  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36755610 cttaaagctcaatagatttgaaaacacttaagaaatcttaacatagaaaatttataagaattgtctaagtgtgtgcgctatataatttatcaaagttttg 36755511  T
Q  424 gcactgttttcaaacgtgaagtctctctcttttttaaactgctcatggttcttttt 479  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36755510 gcactgtttttaaacgtgaagtctctctcttttttaaactgctcatggttcttttt 36755455  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 300
Target Start/End: Original strand, 26331415 - 26331521
Alignment:
Q  193 tataatcacacaagattacaattacctagacacacaagtctaagatttcttgcctctcctagaggacttcttgaaatcagagtttacaactaaaattgtt 292  Q
    |||||| ||||||||||||| |||| |||||||||||||| |||||||||| ||||| ||  |||||||| |  |||||||||| |||| |||| ||| |    
T  26331415 tataattacacaagattacagttacttagacacacaagtcaaagatttcttacctcttcttaaggacttc-tacaatcagagttcacaaataaatttgat 26331513  T
Q  293 ttatgttt 300  Q
    || |||||    
T  26331514 ttgtgttt 26331521  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 20817876 - 20817829
Alignment:
Q  193 tataatcacacaagattacaattacctagacacacaagtctaagattt 240  Q
    |||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  20817876 tataatcacacaagattacagttacttagacacacaaatctaagattt 20817829  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 42825625 - 42825588
Alignment:
Q  226 acaagtctaagatttcttgcctctcctagaggacttct 263  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  42825625 acaagtctaagatttcttgcctctccttgaggacttct 42825588  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 10650092 - 10650045
Alignment:
Q  194 ataatcacacaagattacaattacctagacacacaagtctaagatttc 241  Q
    ||||||| |||||||||||||||| || |||||||||||||| |||||    
T  10650092 ataatcatacaagattacaattacttaaacacacaagtctaaaatttc 10650045  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 33545813 - 33545969
Alignment:
Q  194 ataatcacacaagattacaattacctagacacacaagtctaagattt-cttgcctctcctagaggacttcttgaaatcagagtttacaactaaaattgtt 292  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||| | || ||| ||| || |||||| |  ||||||||||||||  |||| ||| |    
T  33545813 ataatcacacaagattaccattacttagacacacaagtctaagatttccatgtctcaccttgatgacttc-tacaatcagagtttacagataaatttgat 33545911  T
Q  293 ttatgttt--------agacctagagagtggtaaactaacttaaagctcaatagactt 342  Q
    | ||||||        | || |||||||||||||||||||||||||||||||||||||    
T  33545912 tgatgtttacactttgatacttagagagtggtaaactaacttaaagctcaatagactt 33545969  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 12991724 - 12991655
Alignment:
Q  193 tataatcacacaagattacaa-ttacctagacacacaagtctaagatttcttgcctctcctagaggactt 261  Q
    |||| |||||||||||||||| |||| | |||||| |||||||| ||||  |||||||||| ||||||||    
T  12991724 tatattcacacaagattacaatttacatggacacataagtctaaaattttatgcctctccttgaggactt 12991655  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 31270662 - 31270765
Alignment:
Q  184 attttctattataatcacacaagattacaattacctagacacacaagtctaagattt-cttgcctctc-ctagaggacttcttgaaatcagagtttacaa 281  Q
    |||||||| ||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||| | || ||||||||| |  |||||||||||||||    
T  31270662 attttctactataatcacacaagattacaattacttagacacacatgtctaatatttccttgcctcacacttgaggacttc-tacaatcagagtttacaa 31270760  T
Q  282 ctaaa 286  Q
     ||||    
T  31270761 ataaa 31270765  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 11693668 - 11693611
Alignment:
Q  184 attttctattataatcacacaagattacaattacctagacacacaagtctaagatttc 241  Q
    |||||| | ||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  11693668 attttcgactataatcacacaagattacaattacttagacacacaagtctaatatttc 11693611  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 24677032 - 24677080
Alignment:
Q  193 tataatcacacaagattacaattacctagacacacaagtctaagatttc 241  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  24677032 tataatcacacaagattacaattactttaacacacaagtctaagatttc 24677080  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 22641951 - 22641997
Alignment:
Q  195 taatcacacaagattacaattacctagacacacaagtctaagatttc 241  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  22641951 taatcacacaagattacaattacttaaacacacaagtctaagatttc 22641997  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 25955115 - 25955067
Alignment:
Q  193 tataatcacacaagattacaattacctagacacacaagtctaagatttc 241  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  25955115 tataatcgcacaagattacaattatttagacacacaagtctaagatttc 25955067  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 36463269 - 36463339
Alignment:
Q  193 tataatcacacaagattacaattacctagacacacaagtctaagatttcttgcctctcctagaggacttct 263  Q
    |||||||||| |||||||||||||| | ||||||||| ||||||||||| || ||  ||| ||||||||||    
T  36463269 tataatcacataagattacaattacttggacacacaaatctaagatttcatgtcttaccttgaggacttct 36463339  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 15991153 - 15991078
Alignment:
Q  191 attataatcacacaagattacaattacctagacacac-aagtctaagatttc-ttgcctctcctagaggacttctt 264  Q
    |||||||||| |||||||||||||||| ||||||| | |||| ||||||||| ||||||| ||| ||| |||||||    
T  15991153 attataatcatacaagattacaattacttagacacgcaaagtttaagatttcattgcctcaccttgagaacttctt 15991078  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 16192838 - 16192782
Alignment:
Q  184 attttctattataatcacacaagattacaattacctagacacacaagtctaagattt 240  Q
    |||||||| |||||||| |||||||||||| ||  |||| |||||||||| ||||||    
T  16192838 attttctactataatcatacaagattacaaatatttagatacacaagtcttagattt 16192782  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 17772195 - 17772135
Alignment:
Q  183 aattttctattataatcacacaagattacaattacctagacacacaagtctaagatttctt 243  Q
    ||||||| | |||||||| | || ||||||||||| ||||||||||| | |||||||||||    
T  17772195 aattttccactataatcataaaatattacaattacttagacacacaaatataagatttctt 17772135  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 1186302 - 1186254
Alignment:
Q  193 tataatcacacaagattacaattacctagacacacaagtctaagatttc 241  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  1186302 tataataacataagattacaattacttagacacacaagtctaagatttc 1186254  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 9856021 - 9855971
Alignment:
Q  309 agagtggtaaactaacttaaagctcaatagacttaaaaacacttaagaaat 359  Q
    |||||||||||||||||||||| |||||||||||   ||||||||||||||    
T  9856021 agagtggtaaactaacttaaagttcaatagacttctcaacacttaagaaat 9855971  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 17651935 - 17651862
Alignment:
Q  176 tccaacgaattttctattataatcacacaagattacaattacctagacacacaagtctaaga-tttcttgcctc 248  Q
    |||||| ||||||  | ||||| |||||||||| |||||||| |||||| |||||||||||| |||||||||||    
T  17651935 tccaacaaattttacactataagcacacaagatgacaattacttagacatacaagtctaagattttcttgcctc 17651862  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 286
Target Start/End: Complemental strand, 24716486 - 24716395
Alignment:
Q  196 aatcacacaagattacaattacctagacacacaagtctaagattt-cttgcctctcct-agaggacttcttgaaatcagagtttacaactaaa 286  Q
    |||||||||  ||||||||||| ||||||||||||||||| |||| |||||||| | | |||||||||| |  ||||||||||||||| ||||    
T  24716486 aatcacacatcattacaattacttagacacacaagtctaaaatttccttgcctcacataagaggacttc-tacaatcagagtttacaaataaa 24716395  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 17651796 - 17651761
Alignment:
Q  307 agagagtggtaaactaacttaaagctcaatagactt 342  Q
    ||||||||||||||||||||||||||||||| ||||    
T  17651796 agagagtggtaaactaacttaaagctcaataaactt 17651761  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 3318615 - 3318670
Alignment:
Q  194 ataatcacacaagattacaattacctagacacacaagtctaagattt-cttgcctc 248  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||    
T  3318615 ataatcacacaagattacaattacttagacgcacaactctaagatttacttgcctc 3318670  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 2905740 - 2905783
Alignment:
Q  219 tagacacacaagtctaagatttcttgcctctcctagaggacttc 262  Q
    ||||||||||||||||||||||| |||||||||| || ||||||    
T  2905740 tagacacacaagtctaagatttcctgcctctccttgaagacttc 2905783  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 55212556 - 55212611
Alignment:
Q  184 attttctattataatcacacaagattacaattacctagacacacaagtctaagattt 240  Q
    |||||| | ||||||||||| ||||||||||||| || |||||||||| ||||||||    
T  55212556 attttccactataatcacacgagattacaattactta-acacacaagtttaagattt 55212611  T

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Target: scaffold0466 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 5239 - 5191
Alignment:
Q  193 tataatcacacaagattacaattacctagacacacaagtctaagatttc 241  Q
    |||||||||| | |||||||||||| |||||||||||| |||| |||||    
T  5239 tataatcacaaaggattacaattacgtagacacacaagcctaaaatttc 5191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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