View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18050_low_9 (Length: 485)
Name: NF18050_low_9
Description: NF18050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18050_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 7 - 467
Target Start/End: Original strand, 52862668 - 52863128
Alignment:
| Q |
7 |
gtgagaagaaacgcagtccaagtgcaggctcaaatggagaaagaaacagtagaggaagtggtgaaaatggaggaccaaaactcatagtattcaacaacaa |
106 |
Q |
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| T |
52862668 |
gtgagaagaaacgcagtccaagtgcaggctcaaatggagaaagaaacagtagaggaagtggtgaaaatggaggaccaaaactcatagtattcaacaacaa |
52862767 |
T |
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| Q |
107 |
aatcacatatgctgaaacattagaagcaacaagaaactttgatgaagaaaacgttttaagcagaggaaaacatggacttgttttcaaagcctcatatcaa |
206 |
Q |
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| T |
52862768 |
aatcacatatgctgaaacattagaagcaacaagaaactttgatgaagaaaacgttttaagcagaggaaaacatggacttgttttcaaagcctcatatcaa |
52862867 |
T |
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| Q |
207 |
gacggaatggttctatcaattcgtagacttccaaatggatcaacattgatggatgaagctacattccgcaaagaagcagaatcattaggcaaagttaagc |
306 |
Q |
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| T |
52862868 |
gacggaatggttctatcaattcgtagacttccaaatggatcaacattgatggatgaagctacattccgcaaagaagcagaatcattaggcaaagttaagc |
52862967 |
T |
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| Q |
307 |
atagaaacttaacagttttacgtggatattatgcaggaccaccacctgatgtaagactattagtttatgattacatgccaaatggaaatttaggtacatt |
406 |
Q |
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| T |
52862968 |
atagaaacttaacagttttacgtggatattatgcaggaccaccacctgatgtaagactattagtttatgattacatgccaaatggaaatttaggtacatt |
52863067 |
T |
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| Q |
407 |
gcttcaagaagcttcacaacaagatggtcatgttttgaattggccaatgcgtcatttgatt |
467 |
Q |
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| T |
52863068 |
gcttcaagaagcttcacaacaagatggtcatgttttgaattggccaatgcgtcatttgatt |
52863128 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 276 - 455
Target Start/End: Original strand, 8414039 - 8414215
Alignment:
| Q |
276 |
aaagaagcagaatcattaggcaaagttaagcatagaaacttaacagttttacgtggatattatgcaggaccaccacctgatgtaagactattagtttatg |
375 |
Q |
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|||||||| |||||| |||||||| | ||||| ||||| ||||| ||| | | || || ||||||||||||||| ||| | ||||| || | || | |
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| T |
8414039 |
aaagaagctgaatcactaggcaaaataaagcacagaaatttaaccgttctcagaggttactatgcaggaccacca---gatatgagactcttggcctacg |
8414135 |
T |
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| Q |
376 |
attacatgccaaatggaaatttaggtacattgcttcaagaagcttcacaacaagatggtcatgttttgaattggccaatg |
455 |
Q |
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| T |
8414136 |
attacatgcccaatggaaaccttgcaacactcctccaagaagcttctcaccaagatggtcatgttctaaattggccaatg |
8414215 |
T |
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