View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_high_1 (Length: 727)
Name: NF18051_high_1
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 712
Target Start/End: Original strand, 27010269 - 27010976
Alignment:
| Q |
1 |
attattctctgtagaaagtctattttgtaattacatccacatcaagagggaccttcactggagtaactttattccacataagatcgcaaataggagactt |
100 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27010269 |
attattctttgtagaaagtctattttgtaataacatccacatcaagagggatcttcactggagtaactttattccacataagatcgcaaataggagactt |
27010368 |
T |
|
| Q |
101 |
ttaaatgctcgtgtccgtcatcaacatctagtaagctcctttgactaaaaacttgctaccaagtatattaatatttctgaaagtgcgtttaattttgttc |
200 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||||||||||||||||| || | |||||||||||| |||| |||||| |||||||||||| |
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| T |
27010369 |
ttaaatgcttgtgttcgtcatcaacatctagtaagctcctttgactaaaaagttaccaccaagtatatt------tctgcaagtgcatttaattttgttt |
27010462 |
T |
|
| Q |
201 |
tcttggaaaataagattatcaacatacaaaaaatactctctatctcactctccttcacattgaaacaacattcgcatgcaactccccataaccccgcccc |
300 |
Q |
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||||| |||||||||||||| |||||||||||| ||||| || || ||||| |||| |||||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
27010463 |
tcttgaaaaataagattatcgacatacaaaaaacactctgtaactgactcttcttcgcattgaaacaacatacgcatgcaactccacataaacccgcccc |
27010562 |
T |
|
| Q |
301 |
c-tcttcaccattcaacaccaaattagcaacaatgacccnnnnnnnnatgaatagtcaaaccgtataatctactaaattaatcccttaacccaaggatca |
399 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27010563 |
cctcttcaccattcaacaccaaattagcaacaatgaccctttttt--atgaatagtcaaaccgtataatctactaaattaatcccttaatccaaggatca |
27010660 |
T |
|
| Q |
400 |
tgcgagacaatgagttcctctaataaccaatcattttttctattttgttaaaaccaattaacttggtcattgtggtactcatgccctactatttaaaata |
499 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27010661 |
tgcgagacaatgagttcctctcataaccaatcattttttctattttgttaaaaccaattaacttggtcattgtggtactcatgccctactatttaaaata |
27010760 |
T |
|
| Q |
500 |
tctctccaccacacagaatctctacttgaactcgtaatcacaccgtcatttaacaattcatatctttattttgttaaaactttaaacaatgaatcattct |
599 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27010761 |
tctctccaccacatagaatctctacttgaactcgtaatcacaccgccatttaacaatccatatctttattttgttaaaactttaaaccatgaatcattct |
27010860 |
T |
|
| Q |
600 |
cgtctctctacatatcacaatgatcacatgaactg-cagtcctataagggtcatgatttctctactttgaagaaaccc--caatttcacacagttttcaa |
696 |
Q |
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|||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
27010861 |
cgtctctctacatatcacaacgatcacatgaactgtgaatcctataagggtcaggatttctctactctgaagaaaccccacaatttcacacagttttcaa |
27010960 |
T |
|
| Q |
697 |
ttgcaacccttggatc |
712 |
Q |
| |
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|||||||||||||||| |
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| T |
27010961 |
ttgcaacccttggatc |
27010976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 16572412 - 16572346
Alignment:
| Q |
496 |
aatatctctccaccacacagaatctctacttgaactcgtaatcacaccgtcatttaacaattcatat |
562 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| | ||||| ||| ||||| |||| |||||| |
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| T |
16572412 |
aatatctctccaccacactaaatctctacttgaacttgcaatcataccaccatttgacaactcatat |
16572346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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