View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18051_high_14 (Length: 271)
Name: NF18051_high_14
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 990274 - 990521
Alignment:
| Q |
7 |
ggaattagctttgagaatctttggtgagatgccagagagtaatcttgtatcttggaacacaatgattggtgccatggttcaagcaagcatgtttgaggaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
990274 |
ggaattagctttgagaatctttggtgagatgccagagagtaatcttgtatcttggaacacaatgattggtgccatggttcaagcaagcatgtttgaggaa |
990373 |
T |
|
| Q |
107 |
gcaattgatttattcagggagatgcaaaaccaagggattaaaggagatagagtgacaatggtgggtattgcttctgcctgtggatatttaggagctcttg |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
990374 |
gcaattgatttactcagggagatgcaaaaccaagggattaaaggagatagagtgacaatggtgggtattgcttctgcctgtggatatttaggagctcttg |
990473 |
T |
|
| Q |
207 |
atcttgctaagtggatctatacttacattgagaaaaatgacattcaca |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
990474 |
atcttgctaagtggatctatacttacattgagaaaaatgacattcaca |
990521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University