View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18051_high_19 (Length: 221)

Name: NF18051_high_19
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18051_high_19
NF18051_high_19
[»] chr3 (3 HSPs)
chr3 (72-209)||(11089899-11090036)
chr3 (103-179)||(9260727-9260803)
chr3 (20-52)||(11090070-11090102)
[»] chr4 (2 HSPs)
chr4 (47-182)||(35781872-35782008)
chr4 (20-181)||(14135739-14135904)
[»] chr1 (1 HSPs)
chr1 (27-182)||(30951339-30951497)
[»] chr8 (1 HSPs)
chr8 (103-182)||(23585362-23585441)
[»] chr6 (3 HSPs)
chr6 (27-161)||(10099042-10099179)
chr6 (39-129)||(4890703-4890794)
chr6 (20-106)||(27986574-27986662)
[»] chr5 (1 HSPs)
chr5 (35-182)||(41842424-41842571)
[»] chr2 (2 HSPs)
chr2 (51-182)||(15262891-15263023)
chr2 (103-182)||(39266121-39266200)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 72 - 209
Target Start/End: Complemental strand, 11090036 - 11089899
Alignment:
Q  72 tattctgtttgatgcactattaatataggataattatttcttttacttatcatatcctttcaattctttgtaatttctatcctaaatttaggttgagtta 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  11090036 tattctgtttgatgcactattaatataggataattatttcttttacttatcatatcctttcaattctttgtaacttctatcctaaatttaggctgagtta 11089937  T
Q  172 aaattaacctaaccttttaattacgccgcttcttctca 209  Q
    |||||||||||||||||| |||||||||||||||||||    
T  11089936 aaattaacctaaccttttgattacgccgcttcttctca 11089899  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 9260803 - 9260727
Alignment:
Q  103 aattatttcttttacttatcatatcctttcaattctttgtaatttctatcctaaatttaggttgagttaaaattaac 179  Q
    |||||||  |||||||||||||||||| ||| || |||||| |||||||||||| |||||| || ||||||||||||    
T  9260803 aattattcattttacttatcatatcctatcacttttttgtattttctatcctaagtttaggctgtgttaaaattaac 9260727  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 11090102 - 11090070
Alignment:
Q  20 tgatggtcaggatagagagaggataagattaat 52  Q
    ||||||||||||||||||||| |||||||||||    
T  11090102 tgatggtcaggatagagagagaataagattaat 11090070  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 35782008 - 35781872
Alignment:
Q  47 attaatatatcctatcttatttcaatattctgtttgatgcactattaatataggataa-ttatttcttttacttatcatatcctttcaattctttgtaat 145  Q
    |||| |||||| |||| ||||||||| |||| |||| ||||  | | | ||||||||| |||||  ||||||||||  |||| | ||| | ||||||| |    
T  35782008 attagtatatcatatcctatttcaatcttctctttggtgcaacaatgagataggataaattattcattttacttattttatcttatcactcctttgtatt 35781909  T
Q  146 ttctatcctaaatttaggttgagttaaaattaaccta 182  Q
    ||||||||||||||||||||| |||||||||||||||    
T  35781908 ttctatcctaaatttaggttgggttaaaattaaccta 35781872  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 14135904 - 14135739
Alignment:
Q  20 tgatggtcaggatagagag--aggataagattaatatatcctatcttatttcaatattctgtttgatgcactattaatataggataa-ttatttctttta 116  Q
    |||||||||||||||| |   |||||| ||  |||||||| |||||| ||| |||  | |||||||||||| | ||| ||| ||||| ||||| |||| |    
T  14135904 tgatggtcaggatagaaaatcaggataggaaaaatatatcatatcttgttttaatcctttgtttgatgcaccaataaaatatgataaattattcctttaa 14135805  T
Q  117 cttatcatatcctttcaattctttgtaatttctatcct-aaatttaggttgagttaaaattaacct 181  Q
    ||||||||||||| ||| | ||||||| |||||||||| |  |||||| || ||||||||||||||    
T  14135804 cttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacct 14135739  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 30951339 - 30951497
Alignment:
Q  27 caggatagagagag--gataagattaatatatcctatcttatttcaatattctgtttgatgcactattaatataggataa-ttatttcttttacttatca 123  Q
    |||||||||||||   |||| |||||  |||||||||| ||| | ||| ||||||||| |||| || | | ||||||||| ||||| |||||||||||||    
T  30951339 caggatagagagacaagatatgattagcatatcctatcctatcttaatcttctgtttggtgcaataatgagataggataaattattccttttacttatca 30951438  T
Q  124 tatcctttcaattctttgtaatttctatcctaaatttaggttgagttaaaattaaccta 182  Q
    ||| || ||  | ||||||| |||||||||||| |||| |||  |||||||||||||||    
T  30951439 tatgctatcgctcctttgtattttctatcctaagtttaagttaggttaaaattaaccta 30951497  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 23585362 - 23585441
Alignment:
Q  103 aattatttcttttacttatcatatcctttcaattctttgtaatttctatcctaaatttaggttgagttaaaattaaccta 182  Q
    ||||||| |||||||||||| |||||| ||| |   ||||| |||||||||||| ||||||||| |||||||||||||||    
T  23585362 aattattacttttacttatcctatcctatcactcagttgtattttctatcctaagtttaggttgggttaaaattaaccta 23585441  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 10099042 - 10099179
Alignment:
Q  27 caggatagagaga--ggataagattaatatatcctatcttatttcaatattctgtttgatgcactattaatataggataa-ttatttcttttacttatca 123  Q
    |||||||||||||  ||||| |||||  |||||||||| ||| ||||| ||||||||| ||||  | | | ||||||||| ||||| | |||||||||||    
T  10099042 caggatagagagacaggatatgattagcatatcctatcatatctcaatcttctgtttggtgcaacaatgagataggataaattattccatttacttatca 10099141  T
Q  124 tatcctttcaattctttgtaatttctatcctaaattta 161  Q
    |||| | ||| | ||||||| |||||||||||| ||||    
T  10099142 tatcttatcactcctttgtattttctatcctaagttta 10099179  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 4890794 - 4890703
Alignment:
Q  39 aggataagattaatatatcctatcttatttcaatattctgtttgatgcactattaatataggat-aattatttcttttacttatcatatcct 129  Q
    |||||| |||||||||||| |||| ||||||||| ||||||||| |||| || ||| ||   || ||||||| ||| |||||||||||||||    
T  4890794 aggatatgattaatatatcatatcctatttcaatcttctgtttggtgcaataataagatgacataaattattccttctacttatcatatcct 4890703  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 27986662 - 27986574
Alignment:
Q  20 tgatggtcaggatagagagag--gataagattaatatatcctatcttatttcaatattctgtttgatgcactattaatataggataatt 106  Q
    ||||||||| ||||||||||   |||| |||||||||||  |||||||||| |||  | |||||||||||||| | | |||||||||||    
T  27986662 tgatggtcaagatagagagacaagatatgattaatatatgttatcttatttaaatcatatgtttgatgcactaatgagataggataatt 27986574  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 41842571 - 41842424
Alignment:
Q  35 agagaggataagattaatatatcctatcttatttcaatattctgtttgatgcactattaatataggat-aattatttcttttacttatcatatcctttca 133  Q
    |||||||||| |||||||||||| |||| ||||||||| ||||||||| ||||  | | | |||  || ||||||| |||||||||||  |||||| |||    
T  41842571 agagaggatatgattaatatatcatatcctatttcaatcttctgtttggtgcaacagtgagatataataaattattccttttacttatactatcctatca 41842472  T
Q  134 attctttgtaatttctatcctaaatttaggttgagttaaaattaaccta 182  Q
     | ||||||| ||||||| |||||||| || ||  ||||||| ||||||    
T  41842471 ctcctttgtattttctat-ctaaattttggctggattaaaatcaaccta 41842424  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 15263023 - 15262891
Alignment:
Q  51 atatatcctatcttatttcaatattctgtttgatgcactattaatataggataa-ttatttcttttacttatcatatcctttcaattctttgtaatttct 149  Q
    ||||||| |||||| ||| ||| || |||||||||||| | ||  ||| ||||| ||||||||||||| ||| ||||||| ||| | ||||||| |||||    
T  15263023 atatatcatatcttgttttaatcttttgtttgatgcaccaatagaatatgataaattatttcttttacctattatatcctatcactcctttgtattttct 15262924  T
Q  150 atcctaaatttaggttgagttaaaattaaccta 182  Q
    ||||| | |||  | || |||||||||||||||    
T  15262923 atcctgagttttagctgggttaaaattaaccta 15262891  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 39266121 - 39266200
Alignment:
Q  103 aattatttcttttacttatcatatcctttcaattctttgtaatttctatcctaaatttaggttgagttaaaattaaccta 182  Q
    ||||||| |||||||||||| |||| | ||| | ||||| | |||||||||||| |||| | || |||||||||||||||    
T  39266121 aattattccttttacttatcttatcttatcactcctttgcattttctatcctaagtttaagctgggttaaaattaaccta 39266200  T

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