View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_high_21 (Length: 217)
Name: NF18051_high_21
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 23883475 - 23883292
Alignment:
| Q |
16 |
atgaagctcgatcttatggaaactagccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctcttccaaaag |
115 |
Q |
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| T |
23883475 |
atgaagctcgatcttatggaaactagccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctgcttgcccgcaatctcttccaaaag |
23883376 |
T |
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| Q |
116 |
acaccgatcaatttgccattctccccatgcaacactccctcctttatatgtgccatcggtgatcaaacgaatccaaccactttt |
199 |
Q |
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| T |
23883375 |
acactgatcaatttgccattctccccatgcaacactccctcctttatatgtgccatcggtgatcaaacgaatccaaccactttt |
23883292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 23419834 - 23420007
Alignment:
| Q |
16 |
atgaagctcgatcttatggaaactagccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctcttccaaaag |
115 |
Q |
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| T |
23419834 |
atgaagctcgatcttatggaaaccagccaaattcaaaccttcaaaaactatccaaagttccgccacttacgcgctacttaaccacaatctctccaaaaag |
23419933 |
T |
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| Q |
116 |
acaccgatcaatttgccattctccccatgcaacactccctcctttatatgtgccatcggtgatcaaacgaatcca |
190 |
Q |
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| T |
23419934 |
acacagatccatttgctattctccccatgcaacactccctcctttatatgtgcca-ccgtgatcaaacggatcca |
23420007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 23877055 - 23876941
Alignment:
| Q |
40 |
agccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctcttccaaaagacaccgatc-aatttgccattctc |
138 |
Q |
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| T |
23877055 |
agccaaattaaaaccttcaaaaactcccaaaagttccgccacatacgtgctacacacccccaatctcttcgaaaagacacagatcaaatgtgtcattcta |
23876956 |
T |
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| Q |
139 |
cccatgcaacactcc |
153 |
Q |
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||||||||||||||| |
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| T |
23876955 |
cccatgcaacactcc |
23876941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 23421999 - 23422101
Alignment:
| Q |
40 |
agccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctcttccaaaagacaccgatcaatttgccattctcc |
139 |
Q |
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|||||||||||||||||||||| | | ||||||| ||||||||||| |||| ||| |||||| ||| |||||| || |||| |||||||||||| | |
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| T |
23421999 |
agccaaattcaaaccttcaaaaattcccaaaagttccgccacatacgcactacacacccccaatcttttcgaaaagatacagatccatttgccattcttc |
23422098 |
T |
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| Q |
140 |
cca |
142 |
Q |
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||| |
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| T |
23422099 |
cca |
23422101 |
T |
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