View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_high_24 (Length: 205)
Name: NF18051_high_24
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 44154504 - 44154316
Alignment:
| Q |
18 |
ctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatgtttgatt--------gattgatggat |
109 |
Q |
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| T |
44154504 |
ctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatgtttgattaattgattgattgatggat |
44154405 |
T |
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| Q |
110 |
gctaatgatgcagtaacagtagaaggagaatattatgtgttcaaagacaagtcaaactccatcaaatacatgacccctgatgatgtcca |
198 |
Q |
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| T |
44154404 |
gctaatgatgcagtaacagtagaaggagaatattatgtgttcaaagacaagtcaaactccatcaaatacatgacccctgatgatttcca |
44154316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 40899221 - 40899041
Alignment:
| Q |
18 |
ctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatgtttgattgattgatggatgctaatga |
117 |
Q |
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| T |
40899221 |
ctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatttttgattgattgatggatgctaacga |
40899122 |
T |
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| Q |
118 |
tgcagtaacagtagaaggagaatattatgtgttcaaagacaagtcaaactccatcaaatacatgacccctgatgatgtcca |
198 |
Q |
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| T |
40899121 |
tgctgtaacagtaaaaggagaatattatgtgttcaaagacaaatcaaactccatcaaatgcatgacccctgatgatttcca |
40899041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 40893767 - 40893829
Alignment:
| Q |
19 |
tttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttg |
81 |
Q |
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| T |
40893767 |
tttctgatttcatttgttttagtttagatggtttaattatgatttttgaatgtgttgttgttg |
40893829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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