View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18051_high_3 (Length: 464)

Name: NF18051_high_3
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18051_high_3
NF18051_high_3
[»] chr8 (2 HSPs)
chr8 (17-452)||(18753465-18753899)
chr8 (18-74)||(12814737-12814793)
[»] chr7 (11 HSPs)
chr7 (225-425)||(1560007-1560206)
chr7 (225-375)||(1572038-1572187)
chr7 (225-345)||(1097111-1097230)
chr7 (18-162)||(10038879-10039023)
chr7 (18-74)||(23296458-23296514)
chr7 (365-420)||(375520-375573)
chr7 (102-173)||(4794815-4794886)
chr7 (18-64)||(20596969-20597015)
chr7 (19-68)||(19353095-19353144)
chr7 (22-74)||(10251398-10251450)
chr7 (18-73)||(26133059-26133114)
[»] chr6 (6 HSPs)
chr6 (284-443)||(24495585-24495743)
chr6 (18-179)||(30424789-30424949)
chr6 (215-293)||(24496439-24496528)
chr6 (98-162)||(20138007-20138071)
chr6 (98-162)||(22194798-22194862)
chr6 (18-56)||(20765139-20765177)
[»] chr5 (3 HSPs)
chr5 (18-187)||(24117441-24117609)
chr5 (18-73)||(13942143-13942198)
chr5 (102-162)||(22131061-22131121)
[»] chr2 (4 HSPs)
chr2 (18-179)||(31587330-31587490)
chr2 (17-179)||(27106734-27106894)
chr2 (22-74)||(23801956-23802008)
chr2 (18-73)||(21530344-21530399)
[»] chr4 (3 HSPs)
chr4 (18-179)||(10198395-10198556)
chr4 (35-74)||(16655501-16655540)
chr4 (18-73)||(33737943-33737997)
[»] scaffold0054 (1 HSPs)
scaffold0054 (98-162)||(74580-74644)
[»] scaffold0520 (1 HSPs)
scaffold0520 (18-75)||(5375-5432)
[»] chr1 (4 HSPs)
chr1 (18-68)||(17379767-17379817)
chr1 (18-73)||(51472237-51472292)
chr1 (18-68)||(17355975-17356025)
chr1 (18-67)||(8281885-8281934)
[»] chr3 (4 HSPs)
chr3 (18-68)||(3552358-3552407)
chr3 (18-57)||(31649666-31649705)
chr3 (100-161)||(11655888-11655949)
chr3 (18-62)||(14406774-14406818)
[»] scaffold0505 (1 HSPs)
scaffold0505 (17-58)||(10180-10221)
[»] scaffold0064 (1 HSPs)
scaffold0064 (109-173)||(53155-53219)


Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Complemental strand, 18753899 - 18753465
Alignment:
Q  17 atttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttacggtttgcatctcatgttttattattgttagcatgatgttcta 116  Q
    |||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  18753899 atttgtcatcgaactgggttaacaattctcctatgccttttactttcttgtcatttacggtttgcatctcttgttt-attattgttagcatgatgttcta 18753801  T
Q  117 aacatttcattcaacattcgtaacttatgtctggtgttgaaacatcacttagaacatctgaaaagctaatgcgtcagaatttcagataatttcttcaaga 216  Q
    || |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18753800 aaaatttcattcaacattcataacttatgtctgatgttgaaacatcacttagaacatctgaaaagctaatgcgtcagaatttcagataatttcttcaaga 18753701  T
Q  217 gttgcaacatcataatgtgtaaattctggtttagttggtatatattttgcagcaccaagaaatgagttcattattacattatatgaatatgtggatcatg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18753700 gttgcaacatcataatgtgtaaattctggtttagttggtatatattttgcagcaccaagaaatgagttcattattacattatatgaatatgtggatcatg 18753601  T
Q  317 ctctttcttgaaggatgcttttatttttatttattggagatatattatttaaggaagtattgtttctttgatgtacttgggagattattacttcaataac 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18753600 ctctttcttgaaggatgcttttatttttatttattggagatatattagttaaggaagtattgtttctttgatgtacttgggagattattacttcaataac 18753501  T
Q  417 tgaaaatacagtttctacaaagctattatacagtat 452  Q
    ||||||||||||||||||||||||||||||||||||    
T  18753500 tgaaaatacagtttctacaaagctattatacagtat 18753465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 12814737 - 12814793
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttac 74  Q
    ||||||||| || ||| |||||||||||||||||||||||| ||||||||| |||||    
T  12814737 tttgtcaccaaattgggttaacaattctcttgtgccttttattttcttgtcttttac 12814793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 225 - 425
Target Start/End: Complemental strand, 1560206 - 1560007
Alignment:
Q  225 atcataatgtgtaaattctggtttagttggtatatattttgcagcaccaagaaatgagttcattattacattatatgaatatgtggatcatgctctttct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1560206 atcataatgtgtaaattctggtttagttggtatatattttgctgcaccaagaaatgagttcattattacattatgtgaatatgtggatcatgctctttct 1560107  T
Q  325 tgaaggatgcttttatttttatttattggagatatattatttaaggaagtattgtttctttgatgtacttgggagattattacttcaataactgaaaata 424  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  1560106 tgaaggatgcttttatttttatttattgaagatatattatttaaggaagtactgtttc-ttgatgtacttgggagattattacttcaataactgaaaata 1560008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 225 - 375
Target Start/End: Original strand, 1572038 - 1572187
Alignment:
Q  225 atcataatgtgtaaattctggtttagttggtatatattttgcagcaccaagaaatgagttcattattacattatatgaatatgtggatcatgctctttct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  1572038 atcataatgtgtaaattctggtttagttggtatatattttgctgcaccaagaa-tgagttcattattacattatgtgaatatgtggatcatgctctttct 1572136  T
Q  325 tgaaggatgcttttatttttatttattggagatatattatttaaggaagta 375  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1572137 tgaaggatgcttttatttttatttattgaagatatattatttaaggaagta 1572187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 1097111 - 1097230
Alignment:
Q  225 atcataatgtgtaaattctggtttagttggtatatattttgcagcaccaagaaatgagttcattattacattatatgaatatgtggatcatgctctttct 324  Q
    |||||||||||||| ||||| ||||||||||||||||||||  |||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||    
T  1097111 atcataatgtgtaa-ttctgatttagttggtatatattttgatgcacgaagaaacgagttcattattacattatgtgaatatgtggatcatgttctttct 1097209  T
Q  325 tgaaggatgcttttattttta 345  Q
    | |||||||||||||||||||    
T  1097210 taaaggatgcttttattttta 1097230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 10038879 - 10039023
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttacggtttgcatctcatgttttattattgttagcatgatgttctaa 117  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||  |||| ||||   ||| | | |  |||||  ||  || ||||| ||||||||||    
T  10038879 tttgtcaccgaactgggttaacaattctcttgtgccttctacttttctgtcgtttatattttccttgttgtgtttgttttctgctagcacgatgttctaa 10038978  T
Q  118 acatttcattcaacattcgtaacttatgtctggtgttgaaacatc 162  Q
    ||||| |||||||||||||||  || |||||| ||||| ||||||    
T  10038979 acattacattcaacattcgtattttgtgtctgatgttggaacatc 10039023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 23296514 - 23296458
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttac 74  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||||||| |||||    
T  23296514 tttgtcaccgaactggattaacaattctattgtgcattttattttcttgtcttttac 23296458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 420
Target Start/End: Original strand, 375520 - 375573
Alignment:
Q  365 ttaaggaagtattgtttctttgatgtacttgggagattattacttcaataactgaa 420  Q
    |||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||    
T  375520 ttaagggagtattgtttctt-gatgtacttggg-gattattatttcaataactgaa 375573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 4794815 - 4794886
Alignment:
Q  102 tagcatgatgttctaaacatttcattcaacattcgtaacttatgtctggtgttgaaacatcacttagaacat 173  Q
    ||||| |||||||||||||| |||||||||||  || | || |||||||||||| |||||| | ||||||||    
T  4794815 tagcacgatgttctaaacatctcattcaacatctgttatttgtgtctggtgttggaacatcgcatagaacat 4794886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 20596969 - 20597015
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttct 64  Q
    |||||||||||||| | ||||||| || |||||||||||||||||||    
T  20596969 tttgtcaccgaactcggttaacaaatcacttgtgccttttactttct 20597015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 19353144 - 19353095
Alignment:
Q  19 ttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtc 68  Q
    |||||| |||||||| |||||||||| | |||||| ||||||||||||||    
T  19353144 ttgtcatcgaactgggttaacaattcacctgtgccatttactttcttgtc 19353095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 10251450 - 10251398
Alignment:
Q  22 tcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttac 74  Q
    |||||||||||| |||||||||||| ||||| ||||||| | ||||| |||||    
T  10251450 tcaccgaactgggttaacaattctcctgtgcattttactctattgtcttttac 10251398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 26133059 - 26133114
Alignment:
Q  18 tttgtcaccgaactggattaacaattctc-ttgtgccttttactttcttgtcattta 73  Q
    |||||||||||||||| |||||||  ||| ||||| |||||||||||||||||||||    
T  26133059 tttgtcaccgaactgggttaacaaa-ctcattgtgtcttttactttcttgtcattta 26133114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 284 - 443
Target Start/End: Complemental strand, 24495743 - 24495585
Alignment:
Q  284 tcattattacattatatgaatatgtggatcatgctctttcttgaaggatgcttttatttttatttattggagatatattatttaaggaagtattgtttct 383  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||     
T  24495743 tcattattacattatgtgaatatgtggatcatgctctttcttgaaggatgcttttatttttatttattggagatatattatttacggaagtactgtttc- 24495645  T
Q  384 ttgatgtacttgggagattattacttcaataactgaaaatacagtttctacaaagctatt 443  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24495644 ttgatgtaattgggagattattacttcaataactgaaaatacagtttctacaaagttatt 24495585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 30424949 - 30424789
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttacggtttgcatctcatgttttattattgttagcatgatgttctaa 117  Q
    |||||||||||||||| | ||||||  || ||||  ||||||||||||||| |||||| |||||||    |  ||||||  |||||||| ||||||||||    
T  30424949 tttgtcaccgaactggttcaacaatcttcctgtgtattttactttcttgtcttttacg-tttgcattgttttatttatttctgttagcacgatgttctaa 30424851  T
Q  118 acatttcattcaacattcgtaacttatgtctggtgttgaaacatcacttagaacatctgaaa 179  Q
    ||||| |||||||| ||||||  || |||||||||||| ||| |||| ||||| ||||||||    
T  30424850 acattacattcaaccttcgtattttgtgtctggtgttggaacgtcacatagaatatctgaaa 30424789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 215 - 293
Target Start/End: Complemental strand, 24496528 - 24496439
Alignment:
Q  215 gagttgcaacatcataatgtgtaaattctggtttagttgg-----------tatatattttgcagcaccaagaaatgagttcattattac 293  Q
    ||||| ||||||||||||||||||||||||||||||||||           |||||||||||| ||||||||||||||||||||||||||    
T  24496528 gagttacaacatcataatgtgtaaattctggtttagttggtattaggtatatatatattttgctgcaccaagaaatgagttcattattac 24496439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 20138007 - 20138071
Alignment:
Q  98 ttgttagcatgatgttctaaacatttcattcaacattcgtaacttatgtctggtgttgaaacatc 162  Q
    |||||||| |||||||||||||||| |||||||||||||||| || ||| |||||||| ||||||    
T  20138007 ttgttagcttgatgttctaaacattacattcaacattcgtaatttgtgtatggtgttggaacatc 20138071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 22194862 - 22194798
Alignment:
Q  98 ttgttagcatgatgttctaaacatttcattcaacattcgtaacttatgtctggtgttgaaacatc 162  Q
    |||||||| |||||||||||||||| |||||||||||||||| || ||| |||||||| ||||||    
T  22194862 ttgttagcttgatgttctaaacattacattcaacattcgtaatttgtgtatggtgttggaacatc 22194798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 20765139 - 20765177
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttt 56  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  20765139 tttgtcaccgaactgggttaaccattctcttgtgccttt 20765177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 24117609 - 24117441
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttacggtttgcatctcatgttttattattgttagcatgatgttctaa 117  Q
    |||||||||||||||| |||||||||||  ||||||| ||||||| ||||| |||||| |||||||||  ||||| ||| ||||||||   |||||||||    
T  24117609 tttgtcaccgaactgggttaacaattcttctgtgcctgttacttttttgtcttttacgttttgcatcttttgttt-atttttgttagcgcaatgttctaa 24117511  T
Q  118 acatttcattcaacattcgtaacttatgtctggtgttgaaacatcacttagaacatctgaaaagctaatg 187  Q
    | ||| |||||||||||||||  || ||| |||||||| |||||||| ||||||||||||||||||||||    
T  24117510 atattacattcaacattcgtattttgtgtatggtgttggaacatcacgtagaacatctgaaaagctaatg 24117441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 13942143 - 13942198
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcattta 73  Q
    |||||||||||||| | ||||||| |||| |||||| |||||||||||||||||||    
T  13942143 tttgtcaccgaactaggttaacaactctcatgtgccatttactttcttgtcattta 13942198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 22131061 - 22131121
Alignment:
Q  102 tagcatgatgttctaaacatttcattcaacattcgtaacttatgtctggtgttgaaacatc 162  Q
    ||||| |||||||||||||| |||||||||||  |||| || ||||  |||||||||||||    
T  22131061 tagcacgatgttctaaacatctcattcaacatctgtaatttgtgtcacgtgttgaaacatc 22131121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 31587490 - 31587330
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttacggtttgcatctcatgttttattattgttagcatgatgttctaa 117  Q
    |||||||||||||||| |||||||| ||| | ||| ||||||||||||||| |||||| ||| |||    |  ||||||  |||||||||||||||||||    
T  31587490 tttgtcaccgaactgggttaacaatcctcctatgctttttactttcttgtcttttacgtttt-cattattttatttatttctgttagcatgatgttctaa 31587392  T
Q  118 acatttcattcaacattcgtaacttatgtctggtgttgaaacatcacttagaacatctgaaa 179  Q
    ||||| |||||||||||||||  || | |||||||||| |||||||| ||||||||||||||    
T  31587391 acattacattcaacattcgtattttgtatctggtgttggaacatcacatagaacatctgaaa 31587330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 27106894 - 27106734
Alignment:
Q  17 atttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttacggtttgcatctcatgttttattattgttagcatgatgttcta 116  Q
    ||||||||||||||| | |||||||| | |||||||| |||||||||||||| |||||  ||  |   |  || ||||||||||||||||  ||||| ||    
T  27106894 atttgtcaccgaactaggttaacaatgcacttgtgccatttactttcttgtcttttacttttacctaattctg-tttattattgttagcacaatgtt-ta 27106797  T
Q  117 aacatttcattcaacattcgtaacttatgtctggtgttgaaacatcacttagaacatctgaaa 179  Q
    ||||||  |||||||||||||   || | ||| |||||| |||||| | ||||||||||||||    
T  27106796 aacattaaattcaacattcgtcttttgtttctagtgttggaacatcgcatagaacatctgaaa 27106734  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 23801956 - 23802008
Alignment:
Q  22 tcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttac 74  Q
    |||||||||||| ||||| |||||||| ||||||||| ||||||||| |||||    
T  23801956 tcaccgaactgggttaacgattctcttatgccttttattttcttgtcttttac 23802008  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 21530399 - 21530344
Alignment:
Q  18 tttgtcaccgaactggattaacaattctc-ttgtgccttttactttcttgtcattta 73  Q
    |||||||||||||||||| |||||  ||| ||||||| |||||||||||||||||||    
T  21530399 tttgtcaccgaactggataaacaaa-ctcgttgtgccatttactttcttgtcattta 21530344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 10198395 - 10198556
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttacggtttgcatctcatgttttattattgttagcatgatgttc-ta 116  Q
    |||||||||||||| | |||||||| ||| |||||  |||||||||||||| |||||| |||| ||    |  ||||||  |||||||| ||||||| ||    
T  10198395 tttgtcaccgaactaggttaacaatcctcctgtgcactttactttcttgtcttttacg-tttgtattgttttatttatttctgttagcacgatgttccta 10198493  T
Q  117 aacatttcattcaacattcgtaacttatgtctggtgttgaaacatcacttagaacatctgaaa 179  Q
    |||||| |||||| ||||||||  || |||||||||||| |||||||| |||||||| |||||    
T  10198494 aacattacattcatcattcgtattttctgtctggtgttggaacatcacatagaacatgtgaaa 10198556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 16655501 - 16655540
Alignment:
Q  35 ttaacaattctcttgtgccttttactttcttgtcatttac 74  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  16655501 ttaacaattctcctgtgccttttactttcttgtcttttac 16655540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 33737997 - 33737943
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcattta 73  Q
    |||||||||||||||| ||||||| | | |||||||||||||||||||||| ||||    
T  33737997 tttgtcaccgaactgggttaacaaat-tgttgtgccttttactttcttgtctttta 33737943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 74644 - 74580
Alignment:
Q  98 ttgttagcatgatgttctaaacatttcattcaacattcgtaacttatgtctggtgttgaaacatc 162  Q
    ||||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| ||||||    
T  74644 ttgttagcatgatgttctaaacattacattcaacattcgtaatttgtgtatggtgttggaacatc 74580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 5432 - 5375
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcatttacg 75  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||    
T  5432 tttgtcaccgaactgggttaacaattctcttgtgccatttactttcttatcttttacg 5375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 17379767 - 17379817
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtc 68  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  17379767 tttgtcaccgaactgggttaacaattctcctgtgccttttattttcttgtc 17379817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 51472237 - 51472292
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtcattta 73  Q
    |||||||| ||| ||| |||||||||||| ||||||||||| ||||||||| ||||    
T  51472237 tttgtcactgaattgggttaacaattctcatgtgccttttattttcttgtctttta 51472292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 17355975 - 17356025
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtc 68  Q
    |||||||||||||||| |||||||||||| | || |||||| |||||||||    
T  17355975 tttgtcaccgaactgggttaacaattctcctatgacttttattttcttgtc 17356025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 8281934 - 8281885
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgt 67  Q
    |||||||||||||| | |||||||||||| || |||||||| ||||||||    
T  8281934 tttgtcaccgaactaggttaacaattctcatgagccttttattttcttgt 8281885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 3552358 - 3552407
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttactttcttgtc 68  Q
    |||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  3552358 tttgtcaccgaactggattaacaa-tcgcttgtgccttttattttcttgtc 3552407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 31649705 - 31649666
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgcctttt 57  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  31649705 tttgtcaccgaactggattaacaattctcatgtgtctttt 31649666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 11655949 - 11655888
Alignment:
Q  100 gttagcatgatgttctaaacatttcattcaacattcgtaacttatgtctggtgttgaaacat 161  Q
    ||||| |||||||||||| ||| ||||||||||||||||| | || |||| ||||| |||||    
T  11655949 gttagaatgatgttctaagcatctcattcaacattcgtaaatcatatctgatgttggaacat 11655888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 14406774 - 14406818
Alignment:
Q  18 tttgtcaccgaactggattaacaattctcttgtgccttttacttt 62  Q
    |||||||||||||||| |||||||  ||| |||||||||||||||    
T  14406774 tttgtcaccgaactgggttaacaaacctcatgtgccttttacttt 14406818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 10180 - 10221
Alignment:
Q  17 atttgtcaccgaactggattaacaattctcttgtgcctttta 58  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  10180 atttgtcaccgaactgggttaacaattctcctgtgcctttta 10221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 53155 - 53219
Alignment:
Q  109 atgttctaaacatttcattcaacattcgtaacttatgtctggtgttgaaacatcacttagaacat 173  Q
    ||||||||||||| ||||||||||| ||||| || || |  ||||||||||||| | ||||||||    
T  53155 atgttctaaacatctcattcaacatccgtaatttgtgccgagtgttgaaacatctcgtagaacat 53219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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