View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_low_10 (Length: 363)
Name: NF18051_low_10
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 4708361 - 4708033
Alignment:
| Q |
16 |
atgaaaaccttaatggtatagaatccatgaccannnnnnnnaaagaagaatccatgataattttgcagatagtcgttgacgccctaattgatcctaaagt |
115 |
Q |
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| T |
4708361 |
atgaaaaccttaatggtatagaatccatgatcattttttttaaagaagaatccatgatcattttgcagatagtcgttgacaccctacttgatcctaaagt |
4708262 |
T |
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| Q |
116 |
ggttataagatatgacccaaagtcactggttagagatcttgctgacctaatagagagatacacgaagtcgcaggttactggctgaaacatacttttgaag |
215 |
Q |
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| T |
4708261 |
ggttataagatatgacccaaagtcactggttagagatcttgctgacctaatagagagatacacgaagtcgcaagttactggctgaatcatacttttgaag |
4708162 |
T |
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| Q |
216 |
ttttgtcatcacaatatacatagtatgaaattcttatcctttatcaagagcaaattttcactcacttgtagttcaatttttatataaaccataaatttgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4708161 |
-tttgtcatcacaatatacatagtatgaaattcttatcctttatcaagagcaaattttcacacacttgtagttcaatttttatataaaccataaatttgg |
4708063 |
T |
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| Q |
316 |
aattcttctaggtgaatgggtttatttatt |
345 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4708062 |
aattcttctaggtgaatgggtttatttatt |
4708033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 4745984 - 4745869
Alignment:
| Q |
77 |
tttgcagatagtcgttgacgccctaattgatcctaaagtggttataagatatgacccaaagtcactggttagagatcttgctgacctaatagagagatac |
176 |
Q |
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| T |
4745984 |
tttgcagatagttgttgactccctacttgatcctaaagtgggtataatatatgatccaaagtcactgattagagctcttgctgacctaatagagagatac |
4745885 |
T |
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| Q |
177 |
acgaagtcgcaggtta |
192 |
Q |
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| T |
4745884 |
ataaagtcgcatgtta |
4745869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 320
Target Start/End: Complemental strand, 4745779 - 4745680
Alignment:
| Q |
221 |
tcatcacaatatacatagtatgaaattcttatcctttatcaagagcaaattttcactcacttgtagttcaatttttatataaaccataaatttggaattc |
320 |
Q |
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|||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||| |||||||| || ||||||| |
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| T |
4745779 |
tcatcatagtatacatggtatgaaattcttattctttatcaagagcaaattttcacactctggtagttcaatttttatattaaccataatttgggaattc |
4745680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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