View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_low_11 (Length: 359)
Name: NF18051_low_11
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 44154344 - 44153998
Alignment:
| Q |
1 |
atcaaatacatgacccctgatgatttccactatttctacggaagtattactactcttctttcttacttatttcatttgttaatgtttataatgttttggg |
100 |
Q |
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| T |
44154344 |
atcaaatacatgacccctgatgatttccactatttctacggaagtattactactcttctttctgacttatttcatttgttaatgtttataatgttttggg |
44154245 |
T |
|
| Q |
101 |
taattaatattattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacaactatgatgagcgggatgaagaatttggtattattgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44154244 |
taattaatattattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacaactatgatgagcgggatgaagaatttggtattactgttt |
44154145 |
T |
|
| Q |
201 |
tttctgatttaaggatgtttcttcatgtgtttagaatgtgtctggtaattgttattgatggatgcatttacagttaatgaagaagattttgacgactacg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
44154144 |
tttctgatttaaggatgtttcttcatgtgtttagaatgtgtctggtaattgttattgattgatgcatttacagaaaatgaagaagattttgacgactacg |
44154045 |
T |
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| Q |
301 |
acatttcaaactggaaaatcaaaggtatcagtgttctttctgatttt |
347 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
44154044 |
acatttcaaactggaaaatcaaaggtattattgttctttctgatttt |
44153998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 40899069 - 40898723
Alignment:
| Q |
1 |
atcaaatacatgacccctgatgatttccactatttctacggaagtattactactcttctttcttacttatttcatttgttaatgtttataatgttttggg |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
40899069 |
atcaaatgcatgacccctgatgatttccactatttctaccgaagtattactactcttctttctgacttatttcagttgttaatgtttataatgttttggg |
40898970 |
T |
|
| Q |
101 |
taattaatattattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacaactatgatgagcgggatgaagaatttggtattattgttt |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40898969 |
taattattattattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacagctatgatgagcgggatgaagaatttggtattattgttt |
40898870 |
T |
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| Q |
201 |
tttctgatttaaggatgtttcttcatgtgtttagaatgtgtctggtaattgttattgatggatgcatttacagttaatgaagaagattttgacgactacg |
300 |
Q |
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| T |
40898869 |
tttctgatttaaggatgtttcttcatgtgtttagaatgtgtctggtaattattattgattgatacatttacagaaaatgaagaagattttgacgactacg |
40898770 |
T |
|
| Q |
301 |
acatttcaaactggaaaatcaaaggtatcagtgttctttctgatttt |
347 |
Q |
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|||||||| ||||||||||||||||||| | |||||||||||||||| |
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| T |
40898769 |
acatttcatactggaaaatcaaaggtattattgttctttctgatttt |
40898723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 40893952 - 40894013
Alignment:
| Q |
3 |
caaatacatgacccctgatgatttccactatttctacggaagtattactactcttctttctt |
64 |
Q |
| |
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||||||| ||||| ||| ||||||| ||||| || ||| |||||||||||||||||| |||| |
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| T |
40893952 |
caaatacctgacctctgctgatttcaactatgtccacgaaagtattactactcttctatctt |
40894013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 40899318 - 40899273
Alignment:
| Q |
42 |
aagtattactactcttctttcttacttatttcatttgttaatgttt |
87 |
Q |
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||||||||||||||||||| || | |||||||||||||||||||| |
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| T |
40899318 |
aagtattactactcttcttgctggcatatttcatttgttaatgttt |
40899273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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