View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_low_12 (Length: 349)
Name: NF18051_low_12
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 37188208 - 37187890
Alignment:
| Q |
18 |
catagaaagctaatggatttttatatatatagtgagaaagttgaatgttgatggattgtgatattttggaagaatggcaaggtatttatagggtttaggg |
117 |
Q |
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| T |
37188208 |
catagaaagctaatggatttttatatatatagtgagaaagttgaatgttgatggattgtgatattttggaagaatggcaaggtatttatagggtttaggg |
37188109 |
T |
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| Q |
118 |
tgcaaaa-gaaaggaaagttacaagaaggttcaattgaagatatagtatggggtgttgaaagttggtgaggaatgaggagtgggtaaagtaaaggcatgg |
216 |
Q |
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| T |
37188108 |
tgcaaaaagaaaggaaagttacaagaaggttcaattgaagatatagtatggggtgttgaaagttggtgaggaatgaggagtgggtaaagtaaaggcatgg |
37188009 |
T |
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| Q |
217 |
ttggatttggtataggtggatgcccacccaaatgatatcatcacacgcggttgtgcatgaaatgctgtatacccaatagccagccatacaattaatgtgc |
316 |
Q |
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| T |
37188008 |
ttggatttggtataggtggatgcccacccaaatgatatcatcacacgcggttgtgcatgaaatgctgtatacccaatagccagccatacaattaatgtgc |
37187909 |
T |
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| Q |
317 |
aaaacattcaccgcctttg |
335 |
Q |
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| T |
37187908 |
aaaacattcaccgcctttg |
37187890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 194 - 335
Target Start/End: Complemental strand, 53492053 - 53491918
Alignment:
| Q |
194 |
gagtgggtaaagtaaaggcatggttggatttggtataggtggatgcccacccaaatgatatcatcacacgcggttgtgcatgaaatgctgtatacccaat |
293 |
Q |
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| T |
53492053 |
gagtgggtaaagtaaagacatggttgg-tttggtata-----atgcccacccaaatgatatcatcacacacgtttgtgcatgaaatgctgtatacccatt |
53491960 |
T |
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| Q |
294 |
agccagccatacaattaatgtgcaaaacattcaccgcctttg |
335 |
Q |
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| T |
53491959 |
agccagtcacacatttaatgtgtaaaacgttcaccgcctttg |
53491918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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