View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_low_13 (Length: 309)
Name: NF18051_low_13
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 58 - 291
Target Start/End: Complemental strand, 26416414 - 26416181
Alignment:
| Q |
58 |
acatgtcaaattaagctcaaggtctaagcttaaatgaccaagagatgatttttcaggtaaagggtactctctttttgattcttgtgttttcatattcatc |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26416414 |
acatgtcaaattaagctcaaggtctaagcttaaatgaccaagagatgatttttcaggtaaagggtactctctttttgattcttgtgttttcatattcatc |
26416315 |
T |
|
| Q |
158 |
tttgtgttacacaattgtatttgtcctgactgcatgagaaaaattgaatatgtattaattaaattacttcataagaacataattgctacctcggctctaa |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26416314 |
tttgtgttacacaattgtatttgtcctgactgcatgagaaaaattgaatatgtattaattaaattacttcataagaacataattgctacctcggttctaa |
26416215 |
T |
|
| Q |
258 |
tttattttgaacaagtcaaaatgaaatatattaa |
291 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |
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| T |
26416214 |
tttattttgaataagtcaaaatgaaatatattaa |
26416181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 14432763 - 14432801
Alignment:
| Q |
253 |
tctaatttattttgaacaagtcaaaatgaaatatattaa |
291 |
Q |
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| T |
14432763 |
tctaattttttttgaacaagttaaaatgaaatatattaa |
14432801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 4347051 - 4347084
Alignment:
| Q |
258 |
tttattttgaacaagtcaaaatgaaatatattaa |
291 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
4347051 |
tttattttcaacaagtcaaaatgaaatatattaa |
4347084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 291
Target Start/End: Complemental strand, 8462630 - 8462601
Alignment:
| Q |
262 |
ttttgaacaagtcaaaatgaaatatattaa |
291 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
8462630 |
ttttgaacaagtcaaaatgaaatatattaa |
8462601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 291
Target Start/End: Complemental strand, 50818635 - 50818606
Alignment:
| Q |
262 |
ttttgaacaagtcaaaatgaaatatattaa |
291 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
50818635 |
ttttgaacaagtcaaaatgaaatatattaa |
50818606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 25435411 - 25435379
Alignment:
| Q |
259 |
ttattttgaacaagtcaaaatgaaatatattaa |
291 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
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|
| T |
25435411 |
ttattttgaacaagtcaaaatgaattatattaa |
25435379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 13497030 - 13496994
Alignment:
| Q |
255 |
taatttattttgaacaagtcaaaatgaaatatattaa |
291 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||| |
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| T |
13497030 |
taatttttttttaacaagtcaaaatgaaatatattaa |
13496994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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