View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_low_16 (Length: 248)
Name: NF18051_low_16
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 30877620 - 30877849
Alignment:
| Q |
19 |
ctttcggcctcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctc |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30877620 |
ctttctgcctcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggttcctctacaagctcccctc |
30877719 |
T |
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| Q |
119 |
tctccctatccaaaaccagagagaaacttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttactaattctctcagtagcatc |
218 |
Q |
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| T |
30877720 |
tctccctatccaaaaccagagagaaacttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttaccaattctctcagtagcatc |
30877819 |
T |
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| Q |
219 |
tccaaatatatcataaccttccatttccat |
248 |
Q |
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| T |
30877820 |
tccaaatatatcataaccttccatttccat |
30877849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 39332785 - 39332933
Alignment:
| Q |
19 |
ctttcggcctcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctc |
118 |
Q |
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| T |
39332785 |
ctttctgcttcactatgattcttcaaagcttcaatacttctctc---aggtgatacaccctttctttccaatttcacagctgcctccacaagctctcctt |
39332881 |
T |
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| Q |
119 |
tctccctatccaaaaccagagagaaacttgaaccatacccacttccaattac |
170 |
Q |
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| T |
39332882 |
tttctctatctaaaaccagtgaagaagatgaaccatatccatttccatttac |
39332933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 30203571 - 30203705
Alignment:
| Q |
33 |
atgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaa |
132 |
Q |
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| T |
30203571 |
atgattcttcaaagcttcaatacttctctc---aggtgacacaccctttctttctaatttcacagttgcctccacaaactctcctttttctctatccaaa |
30203667 |
T |
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| Q |
133 |
accagagagaaacttgaaccatacccacttccaattac |
170 |
Q |
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| T |
30203668 |
accagcgaagaagatgaaccatatccatttccatttac |
30203705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 12102538 - 12102677
Alignment:
| Q |
28 |
tcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctat |
127 |
Q |
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| T |
12102538 |
tcactatgattcttcaaagcttcgatacttctccc---aggtgacacaccctttctttctaatttcacagctgcctccacaagctctcctttttctctat |
12102634 |
T |
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| Q |
128 |
ccaaaaccagagagaaacttgaaccatacccacttccaattac |
170 |
Q |
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| T |
12102635 |
ccaaaaccagtgaagaagatgaaccatatccacttccatttac |
12102677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 17146474 - 17146603
Alignment:
| Q |
28 |
tcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctat |
127 |
Q |
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| T |
17146474 |
tcactatgattcttcaaagcttcaatacttctctcag--gtg---acaccctttctttctaatttcacagctgcctccgcaagctctcctttttctctat |
17146568 |
T |
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| Q |
128 |
ccaaaaccagagagaaacttgaaccatacccactt |
162 |
Q |
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| T |
17146569 |
ccaaaaccagtgaagaagatgaaccatatccactt |
17146603 |
T |
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