View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18051_low_17 (Length: 245)

Name: NF18051_low_17
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18051_low_17
NF18051_low_17
[»] chr2 (4 HSPs)
chr2 (18-172)||(14569763-14569917)
chr2 (18-172)||(14560008-14560162)
chr2 (50-89)||(32549451-32549490)
chr2 (194-230)||(14569635-14569671)
[»] chr4 (8 HSPs)
chr4 (18-94)||(5345745-5345821)
chr4 (18-93)||(5379580-5379655)
chr4 (33-94)||(5357357-5357418)
chr4 (25-94)||(5423069-5423138)
chr4 (18-94)||(5355243-5355319)
chr4 (18-94)||(5363717-5363793)
chr4 (55-94)||(5891160-5891199)
chr4 (18-94)||(5467365-5467441)
[»] chr5 (1 HSPs)
chr5 (25-94)||(20329764-20329833)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 14569917 - 14569763
Alignment:
Q  18 aataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaacccctgtcatgaaaataaggtgtt 117  Q
    ||||| || |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  14569917 aataaaagcgaggaagaaaactccaaatctacaagtgaattccaactcaacacttaagaaattctaatcaattgaacccctgtcgtgaaaataaggtgtt 14569818  T
Q  118 tcatatgcttgttgtgacaagcttttccctccttcaccaacacaattttgtgtca 172  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14569817 tcatatgcttgttgttacaagcttttccctccttcaccaacacaattttgtgtca 14569763  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 14560162 - 14560008
Alignment:
Q  18 aataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaacccctgtcatgaaaataaggtgtt 117  Q
    ||||||||| ||||| ||||||| ||| | | |||||||||||| |||||||||||||||||| ||||||||| ||| ||| |||||| ||||| |||||    
T  14560162 aataagaggaaggaaaaaaactctaaaaccaaaagtgaatcccacctcaacacttaagaaatttcaatcaattaaactcctttcatgataataacgtgtt 14560063  T
Q  118 tcatatgcttgttgtgacaagcttttccctccttcaccaacacaattttgtgtca 172  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  14560062 tcatatgcttgttgtgacaagcttttccctccttcaccaccacagttttgtgtca 14560008  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 32549490 - 32549451
Alignment:
Q  50 aagtgaatcccaactcaacacttaagaaattccaatcaat 89  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  32549490 aagtgaatcccaactcagcactcaagaaattccaatcaat 32549451  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 14569671 - 14569635
Alignment:
Q  194 agtacaagagaggttcgtgactgaaaatagttattag 230  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  14569671 agtacaagagaggttcgtaactgaaagtagttattag 14569635  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 5345745 - 5345821
Alignment:
Q  18 aataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac 94  Q
    |||||| ||||||| ||||| |||||||| | || | ||||||||||| ||||||||||| ||||||||||||||||    
T  5345745 aataagggggaggaggaaaattccaaagccaaaaataaatcccaactccacacttaagaagttccaatcaattgaac 5345821  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 5379655 - 5379580
Alignment:
Q  18 aataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaa 93  Q
    |||||| ||||||| ||||| |||||||| | || | ||||||||||| |||||||||| ||||||||||||||||    
T  5379655 aataagggggaggatgaaaattccaaagccaaaaataaatcccaactccacacttaagagattccaatcaattgaa 5379580  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 5357418 - 5357357
Alignment:
Q  33 gaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac 94  Q
    ||||||||||||||   || | ||||||||||| ||||||||||||||||||||||||||||    
T  5357418 gaaaactccaaagccgaaaataaatcccaactccacacttaagaaattccaatcaattgaac 5357357  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 5423069 - 5423138
Alignment:
Q  25 gggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac 94  Q
    ||||||| ||||| ||||| || | || | ||||||||||| ||||||||||||||||||||||||||||    
T  5423069 gggaggatgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac 5423138  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 5355319 - 5355243
Alignment:
Q  18 aataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac 94  Q
    |||||| ||||||| ||||| |||||||| | || | ||||||||||| | |||||||||||||||||| |||||||    
T  5355319 aataagggggaggatgaaaattccaaagccaaaaataaatcccaactccaaacttaagaaattccaatcgattgaac 5355243  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 5363793 - 5363717
Alignment:
Q  18 aataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac 94  Q
    |||||| ||||||| ||||| |||||| | | || | ||||||||||| |||||||||||| |||| ||||||||||    
T  5363793 aataagggggaggatgaaaattccaaacccaaaaataaatcccaactccacacttaagaaactccagtcaattgaac 5363717  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 5891199 - 5891160
Alignment:
Q  55 aatcccaactcaacacttaagaaattccaatcaattgaac 94  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  5891199 aatcccaactccacacttaaaaaattccaatcaattgaac 5891160  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 5467365 - 5467441
Alignment:
Q  18 aataagagggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac 94  Q
    ||||||||| |||| ||||| ||||| || | || |  |||||||||| | |||||||||| |||||||||||||||    
T  5467365 aataagaggaaggatgaaaattccaaggccaaaaatacatcccaactccatacttaagaaactccaatcaattgaac 5467441  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 20329833 - 20329764
Alignment:
Q  25 gggaggaagaaaactccaaagctacaagtgaatcccaactcaacacttaagaaattccaatcaattgaac 94  Q
    ||||||| ||||| ||||| || | || | ||||||||||| ||||||||||||||||||||||||||||    
T  20329833 gggaggatgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac 20329764  T

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