View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_low_2 (Length: 534)
Name: NF18051_low_2
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Complemental strand, 27404464 - 27404000
Alignment:
| Q |
15 |
caaaggtgaatgtttgattgctcttaagtgctaactattgctaccaaatgtcatataagctataagttttcacaaactgtgttgaagagcttattgaagt |
114 |
Q |
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| T |
27404464 |
caaaggtgaatgtttgattgctcattagtgctaactattgctaccaaatgtcatataagctataagttttcacaaactgtgttgaagagcttatagaagt |
27404365 |
T |
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| Q |
115 |
aagctaaaacattgtagggagatggtgggtgggtcccatacaagttcagaagttcttatgcccgtaataaacaagccataacactaaatcaattgaagtg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27404364 |
aagctaaaacattgtagggagatggtgggtgggtcccatacaagttcagaagttcttatgcccgtaataaacaagtcataacactaaatcaattgaagtg |
27404265 |
T |
|
| Q |
215 |
aacagtgtttaaagttcaacaaccttattctttgcatgtctcatgtcttccatgtttaaaggtgcgagggaaatcccttgatcatcgatatgttcttcta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
27404264 |
aacagtgtttaaagttcaacaaccttattctttgcatgtctcatgtcttccatgtttaaaggcgcaagggaaatcccttgatcatcgatatgttcttcta |
27404165 |
T |
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| Q |
315 |
tagcatcggaagcgtcttttctgattttaaattctgcctcctctttcttcttttcctgaaataagtggttattacttagttttacatcacacaaacaata |
414 |
Q |
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| T |
27404164 |
tagtatcagaagcatcttctgcgatttcaaattctgcctcctctttcttcttttcctgaaataagtggttattacttagttttacatcacacaaacaata |
27404065 |
T |
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| Q |
415 |
cacattggatagagatcattttaacaatatcacataactagaagtgatttagtaactaccatttttg |
481 |
Q |
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| T |
27404064 |
cacattggatagagatcattttaaca--atcacattactagaagtgatttagtaactagcatttttg |
27404000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 393
Target Start/End: Complemental strand, 44936476 - 44936319
Alignment:
| Q |
236 |
accttattctttgcatgtctcatgtcttccatgtttaaaggtgcgagggaaatcccttgatcatcgatatgttcttctatagcatcggaagcgtcttttc |
335 |
Q |
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|||||||||||||| | ||||||||| |||||||||||||| ||||| |||| ||||||| || ||| |||||| ||||| |||||| |||| | |
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| T |
44936476 |
accttattctttgcctctctcatgtcctccatgtttaaaggcctgagggcaatcacttgatcttctttatcttcttcggtagcaatggaagcttcttcta |
44936377 |
T |
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| Q |
336 |
tgattttaaattctgcctcctctttcttcttttcctgaaataagtggttattacttag |
393 |
Q |
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||||| || ||||| | ||| |||||||||| || |||||| |||| ||||||||| |
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| T |
44936376 |
agatttcaacttctgtcacctttttcttctttgtctaaaataaatggtaattacttag |
44936319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 45989855 - 45989794
Alignment:
| Q |
236 |
accttattctttgcatgtctcatgtcttccatgtttaaaggtgcgagggaaatcccttgatc |
297 |
Q |
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| T |
45989855 |
accttattctttgcctgtctcatgtcttccatgttcaaaggccggagggaaatcacttgatc |
45989794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 383
Target Start/End: Complemental strand, 44927948 - 44927911
Alignment:
| Q |
346 |
ttctgcctcctctttcttcttttcctgaaataagtggt |
383 |
Q |
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| T |
44927948 |
ttctgcctcctttttcttctttttctgaaataagtggt |
44927911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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