View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_low_4 (Length: 464)
Name: NF18051_low_4
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_low_4 |
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| [»] scaffold0240 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 34387819 - 34387511
Alignment:
| Q |
18 |
aaaccaattaaagaaactccaaacagtcaatttcacctcatacatgagctcatcatccttctcgggacaaacttcattgtcatcgtcgctctcaggaact |
117 |
Q |
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| T |
34387819 |
aaaccaattaaagaaactccaaacagtcaatttcacctcatacatgagctcatcatccttctcgggacaaacttcattgtcatcgtcgctctcaagaact |
34387720 |
T |
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| Q |
118 |
tcatcaggcatacttttactctttttccattgtatagttgtagccttagtctctttaagttttccttcatggaaggtaagagactttgcaaggcttggat |
217 |
Q |
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| T |
34387719 |
tcatcaggcatacttttaccctttttccattgtatagttgtagccttagtctctttaagttttccttcatggaaggtaagagactttgcaaggcttggat |
34387620 |
T |
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| Q |
218 |
tatcaaaatacggattttcatcaaagttaaaggtgattgaatagcctgatttggcatcttgattgtcttcaacctcaatagaattgaggtattcatcaaa |
317 |
Q |
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| T |
34387619 |
tatcaaaatatggattttcatcaaagttaaaggtgattgaatagcctgatttggcatcttgattgtcttcaacctcaatagaattgaggtactcatcaaa |
34387520 |
T |
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| Q |
318 |
tatctcgcg |
326 |
Q |
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| T |
34387519 |
tatctcgcg |
34387511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 168 - 300
Target Start/End: Original strand, 21395949 - 21396081
Alignment:
| Q |
168 |
ctctttaagttttccttcatggaaggtaagagactttgcaaggcttggattatcaaaatacggattttcatcaaagttaaaggtgattgaatagcctgat |
267 |
Q |
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| T |
21395949 |
ctctttcagttttccttcatggtaggtaaaagactttgcaatgcttggtttatcaaaataaggattgtcatcaaagttaaaggtgattgaataggctgta |
21396048 |
T |
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| Q |
268 |
ttggcatcttgattgtcttcaacctcaatagaa |
300 |
Q |
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| T |
21396049 |
ctaacatcttgattatcttcaacctcaatagaa |
21396081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 422
Target Start/End: Complemental strand, 10426 - 10201
Alignment:
| Q |
198 |
agactttgcaaggcttggattatcaaaatacggattttcatcaaagttaaaggtgattgaatagcctgatttggcatcttgattgtcttcaacctcaata |
297 |
Q |
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||||||||||| |||| ||||||||||||| | ||| |||| |||||||||||||||||||||| ||| | |||||||||| ||||||||||||||| |
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| T |
10426 |
agactttgcaatgctttgattatcaaaataggcattgtcattaaagttaaaggtgattgaataggctgtactaacatcttgattatcttcaacctcaata |
10327 |
T |
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| Q |
298 |
gaattgaggtattcatcaaatatctcgcggtccttg-tgatcaattgcctagcaaggattggatgggccgtaaaagcacgggaccagaatttgggaatag |
396 |
Q |
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| T |
10326 |
gaactaagatactcatcaaaaatctcgtgatccttgttgttcaaaaggttgacaatgattggatgggccgtaaaagcatgtagccaaaatttaggaacag |
10227 |
T |
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| Q |
397 |
acttgagaagttccccgcgcttatca |
422 |
Q |
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|||||||| || |||||| |||||| |
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| T |
10226 |
tcttgagaactttcccgcgtttatca |
10201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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