View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18051_low_5 (Length: 441)
Name: NF18051_low_5
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 424
Target Start/End: Original strand, 33736014 - 33736423
Alignment:
| Q |
14 |
aatattgatgacctaccttatgaaaatttgtattcaacttgtgcactcttttcattatannnnnnnnattataaaaccagtcaaaccaaatctaacttaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
33736014 |
aatattgatgacctaccttatgaaaatttgtattcaacttgtgcactcttttcattacattttttt-attataaaaccagtcaaaccaaatctaacttaa |
33736112 |
T |
|
| Q |
114 |
taaaaacattattacaagttttctctttataaacttctagcaaatgttacttgagtgcttcattaggtgaagtcttgtagagaatgaaagctatggcatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33736113 |
taaaaacattattacaagttttctctttataaacttctagcaaatgttacttgagtgcttcattaggtgaagtcttgtagagaatgaaagctatggcatt |
33736212 |
T |
|
| Q |
214 |
gaagtgttataacattttggttcttatatttttgcttttcaatgttagcttttatgaaaatgttgtactagctcnnnnnnntggattaggagcttctttc |
313 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33736213 |
gaagtgttataacattttggtccttatatttttgcttttcaatgttagcttttatgaaaatgttgtactagctcaaaaaaatggattaggagcttctttc |
33736312 |
T |
|
| Q |
314 |
atctttggggactctttggtggatgcaggaaacaataactatctttcaactctttctaaggcaaatatacctcccaatggaattgattttaaagcctctg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33736313 |
atctttggggactctttggtggatgcaggaaacaataactatctttcaactctttctaaggcaaatatacctcccaatggaattgattttaaagcctctg |
33736412 |
T |
|
| Q |
414 |
gtggaaatcct |
424 |
Q |
| |
|
||||||||||| |
|
|
| T |
33736413 |
gtggaaatcct |
33736423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University