View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_low_6 (Length: 440)
Name: NF18051_low_6
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 50369192 - 50368912
Alignment:
| Q |
12 |
aaagggcatgaaggtaaattcgtaattggtggcgattttccaacttttgctagctttggtaaggtttatgtatacggaacacccgttttggagtatccgg |
111 |
Q |
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| T |
50369192 |
aaagggcatgaaggtaaattcgtaattggtggtgattttccaacttttgctagctttggtaaggcttatgtatacggaacacccgttttggagtatccgg |
50369093 |
T |
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| Q |
112 |
gtttgattaaagccgcggtccatggtggtcggttgtgtgacccggataagagaccgtggggctcagttgtgatgatgaatgagttgaaggaatgggttga |
211 |
Q |
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| T |
50369092 |
gtttgattaaagccgcggtccatggtggtcggttgtgtgacccggataagagaccgtggggctcagttgtgatgatgaatgagttgaaggaatgggttga |
50368993 |
T |
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| Q |
212 |
agggatatttggtggggttgttgattcaagtgagccggtggtgaaacaatcttgcatgtattcaatgacaccagatgagga |
292 |
Q |
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| T |
50368992 |
agggatatttggtggggttgttgattcaagtgagccagtggtgaaacaatcttgcatgtattcaatgacaccagatgagga |
50368912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 35 - 292
Target Start/End: Complemental strand, 50379332 - 50379075
Alignment:
| Q |
35 |
aattggtggcgattttccaacttttgctagctttggtaaggtttatgtatacggaacacccgttttggagtatccgggtttgattaaagccgcggtccat |
134 |
Q |
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| T |
50379332 |
aattggtggtgattttccaacgtttgctagcttgggtagggttttattgtatggatcgccaagttttgagtttccaggtttgattaaggtggcagttcac |
50379233 |
T |
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| Q |
135 |
ggtggtcggttgtgtgacccggataagagaccgtggggctcagttgtgatgatgaatgagttgaaggaatgggttgaagggatatttggtggggttgttg |
234 |
Q |
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| T |
50379232 |
ggtggtaacctgtgtgacccggataagagaccgtggggggcaggtgtgatgatggatgagatgaaggagtgggttgaagggagattctgtgggttggttg |
50379133 |
T |
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| Q |
235 |
attcaagtgagccggtggtgaaacaatcttgcatgtattcaatgacaccagatgagga |
292 |
Q |
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| T |
50379132 |
attcatccgagcctgttgtgaaacaggcttgtatgtattcaatgactccggatgagga |
50379075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 50368835 - 50368774
Alignment:
| Q |
369 |
aagatggctccggttattggtaagatattgactcaacttgtggtggatggggaaactgatga |
430 |
Q |
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| T |
50368835 |
aagatggctccagttattggtaagatattgactcaacttgtggtggatggggaaactaatga |
50368774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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