View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18051_low_7 (Length: 426)
Name: NF18051_low_7
Description: NF18051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18051_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 15037082 - 15036680
Alignment:
| Q |
8 |
cgaagaaaatttcaaacttactgttgtccacaatgcaactttggaagcaaatgcacctgccggcatattcaatgttatctgagacagagtgttgtcgcca |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
15037082 |
cgaacaaaatttcaaacttactgttgtccacaatgcaactttggaagcaaatgcacctgctggcatattcaatgttatctgagacagagtgtcatcgcca |
15036983 |
T |
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| Q |
108 |
aaggagagaaatcccatgaccgcaacgcttccatatatcaaaatacacaaaacaaaactgcacacaaagaaataagttgaggaatcagagattcacaaag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
15036982 |
aaggagagaaatcccatgaccgcaacgcttccatatatcaaaatacacaaaacaaaactgcacgcaaagaaatacgttgaggaatcagagattcacaaag |
15036883 |
T |
|
| Q |
208 |
aacaaatcgatatcttgttacagtgacattaaaagttaggtatcgaaccatgttatcaatgctttggtgtactgttttttgtcagccatagactggtata |
307 |
Q |
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| T |
15036882 |
aacaaatcgatatcttgttacagtgacattaaaagttaggtatcggaccatgttatcaatgctttggtatactgttttttgtcagccatagactggtata |
15036783 |
T |
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| Q |
308 |
tatttggaaagactgaatgtcctgcaaagcaaaacccataaacaccaatagcaaatggaatgccgctccaattcaccactcgaccagtatgatggaatcc |
407 |
Q |
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| T |
15036782 |
tatttggaaagactgaatgtcctgcaaagcaaaacccataaacaccaatagcaaatggaatgccgctccaattcaccactcgaccagtatgatggaatcc |
15036683 |
T |
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| Q |
408 |
aac |
410 |
Q |
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| T |
15036682 |
aac |
15036680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 282 - 410
Target Start/End: Original strand, 35236215 - 35236343
Alignment:
| Q |
282 |
ttttttgtcagccatagactggtatatatttggaaagactgaatgtcctgcaaagcaaaacccataaacaccaatagcaaatggaatgccgctccaattc |
381 |
Q |
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|||||||| |||||||||||| || ||||| || || ||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||| ||| |
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| T |
35236215 |
ttttttgttagccatagactgataaatattggggaaaactgaatgtcctgcaaagcaaaacccatagataccaaaagcaaatggaatgccactccagttc |
35236314 |
T |
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| Q |
382 |
accactcgaccagtatgatggaatccaac |
410 |
Q |
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| T |
35236315 |
acaaattgaccagtgtgatggaatccaac |
35236343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 410
Target Start/End: Original strand, 35244941 - 35245069
Alignment:
| Q |
282 |
ttttttgtcagccatagactggtatatatttggaaagactgaatgtcctgcaaagcaaaacccataaacaccaatagcaaatggaatgccgctccaattc |
381 |
Q |
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|||||||| ||||||||| || || ||||| ||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||| || ||||| ||| |
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| T |
35244941 |
ttttttgttagccatagattgataaatattgggaaaaactgaatgtcccgcaaagcaaaacccataaataccaaaagcaaatggaacaccactccagttc |
35245040 |
T |
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| Q |
382 |
accactcgaccagtatgatggaatccaac |
410 |
Q |
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| T |
35245041 |
accaatggagcagtgtgatggaagccaac |
35245069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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