View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18052_high_2 (Length: 448)
Name: NF18052_high_2
Description: NF18052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18052_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 53005990 - 53006428
Alignment:
| Q |
1 |
tatcaatcataacttcatatctgttacgtatagctaatattctaatttttct-agaagcaagaactgatgcaatttttcacagccagataaactaataaa |
99 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53005990 |
tatcaatcataacttcctatctgttacatatagctaatattctaattttttttagaagcaagaactgatgcaatttttcacagccagataaactaataaa |
53006089 |
T |
|
| Q |
100 |
tgagtagatttgtcatttgatgtctaccttacaattcggatcattgtgtataattagctacaatgaaaccatgttatcttatccatcagtgcatctaata |
199 |
Q |
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| T |
53006090 |
tgagtagatttgtcatttgatgtctaccttacaattcggatcattgtgtataattagctacaatgaaaccatgttatcttatccatcagtgcatctaata |
53006189 |
T |
|
| Q |
200 |
tcttaaattgcggtgactgttaaaccaagattgcatttacaaggcacacaatgcattcaaataaactttgcttatttctcctggaaaggaaatttttcga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53006190 |
tcttaaattgcggtgactgttaaaccaagattgcatttacaaggcacacaatgcattcaaataaactttgcctatttctcctggaaaggaaatttttcga |
53006289 |
T |
|
| Q |
300 |
catcttactgtagtcatttcataactgatctctagttagttattattcaaatcataattctatgtttccctatgtagcggcaactatccaaaatgattca |
399 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53006290 |
catcttattgtagtcatttcataactgatctctagttagttattattcaaatcataattctatgtttccctatgtagcggcgactatccaaaatgattca |
53006389 |
T |
|
| Q |
400 |
gatattcgtttcgaacacctattcgaaaactaatctgtg |
438 |
Q |
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||||||||||| ||||||||||| ||||||||||||||| |
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| T |
53006390 |
gatattcgttttgaacacctatttgaaaactaatctgtg |
53006428 |
T |
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