View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18052_high_3 (Length: 396)
Name: NF18052_high_3
Description: NF18052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18052_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 26612289 - 26611921
Alignment:
| Q |
18 |
tttacaaaatttgtttttgattggagatttgatgaccctttaagctgatttgatctgggtttatcnnnnnnngtgatgaagggaaataatttgtattgaa |
117 |
Q |
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| T |
26612289 |
tttacaaaatttgtttttgattggagatttgatgactctttaagctgatttgatctgggtttatctttttttgtgatgaagggaaataatttgtattgaa |
26612190 |
T |
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| Q |
118 |
aatttaagttgaaccaatggcacgtaagaagatcagagagtatgattctaagaggttgttgaaggagcattttaagagaatatctggacaggacttgcct |
217 |
Q |
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| T |
26612189 |
aatttaagaagaaccaatggcacgtaagaagatcagagagtatgattctaagaggttgttgaaggagcattttaagagaatatctggacaggacttgcct |
26612090 |
T |
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| Q |
218 |
attaagtctgcacaagtaagtactattttatagttcttgttttttatggtttagctctgaatttcattctttagcttaagttttgatgggtttgattact |
317 |
Q |
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| T |
26612089 |
attaagtctgcacaagtaagtactcttttatagttcttgttttttatggtttagctctgaatttcattctttagcttaagttttgttgggtttgattact |
26611990 |
T |
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| Q |
318 |
cattcacattgatgtttgtaccttataagataaaatacatgatgtgattatttttgttaccatcctatg |
386 |
Q |
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| T |
26611989 |
cattcacattgatgtttgtaccttataagataaaatacatgatgtgattatttttgttaccatcttatg |
26611921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 14661376 - 14661268
Alignment:
| Q |
133 |
aatggcacgtaagaagatcagagagtatgattctaagaggttgttgaaggagcattttaagagaatatctggacaggacttgcctattaagtctgcacaa |
232 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||| ||||||| ||||| |||||||||||| |
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| T |
14661376 |
aatggcacgcaagaagatcagagagtatgattctaagagactgttgaaggagcactttaagagactttctggcaaggacttacctatcaagtctgcacaa |
14661277 |
T |
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| Q |
233 |
gtaagtact |
241 |
Q |
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| T |
14661276 |
gtaagtact |
14661268 |
T |
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