View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18052_low_8 (Length: 240)
Name: NF18052_low_8
Description: NF18052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18052_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 16758990 - 16758893
Alignment:
| Q |
127 |
agtttaggcaagacaagcatttggtttcactgaaatgcacaagtttgttaggaaaagattgtcgtgaaataaatatacatcatacatggattaaatat |
224 |
Q |
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| T |
16758990 |
agtttaggcaagacaagcatttggtttcactgaaatgcacaagtttgttaggaaaagattgtcgtgaaataaatatacatcatacatggattaaatat |
16758893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16759121 - 16759071
Alignment:
| Q |
1 |
atgtctgatttcacaagtatacactctcaagcatagatggatggaagataa |
51 |
Q |
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| T |
16759121 |
atgtctgatttcacaagtatacactctcaagcatagatggatggaagataa |
16759071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 16759053 - 16759020
Alignment:
| Q |
70 |
aggcagaagagaaataaagtttgcagtagcacaa |
103 |
Q |
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| T |
16759053 |
aggcagaagagaaataaagtttgcagtagcacaa |
16759020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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