View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18052_low_9 (Length: 239)
Name: NF18052_low_9
Description: NF18052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18052_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 31904299 - 31904506
Alignment:
| Q |
17 |
atatccaacagcagagataagctgttgaaagagtctacgcgataaatcttcactaaaccgtcctttattggcaattttggcgaataattcaccaccttta |
116 |
Q |
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| T |
31904299 |
atatccaacagcagagataagctgttgaaagagtctacgcgataaatcttcactaaaccgtcctttattggcaatttttgcgaataattcaccaccttta |
31904398 |
T |
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| Q |
117 |
gcaaactccataacaaaatagatcttcgttttcgtagcaagaacttcatgaagccgaacaatattcggatgacgaagcttactcataattgaaatttcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31904399 |
gcaaactccataacaaaatagatcttcgttttcgtagcaagaacttcatgaagccgaacaatattcggatgacgaagcttactcataattgaaatttcac |
31904498 |
T |
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| Q |
217 |
gtttcaca |
224 |
Q |
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|||||||| |
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| T |
31904499 |
gtttcaca |
31904506 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 27312540 - 27312615
Alignment:
| Q |
118 |
caaactccataacaaaatagatcttcgttttcgtagcaagaacttcatgaagccgaacaatattcggatgacgaag |
193 |
Q |
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|||| ||||||||||||||||| ||||| || || ||||||||||| ||||| |||||||||| |||||| |||| |
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| T |
27312540 |
caaaatccataacaaaatagattttcgtcttggtggcaagaacttcgtgaagacgaacaatatgaggatgatgaag |
27312615 |
T |
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