View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_high_12 (Length: 423)
Name: NF18053_high_12
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 3 - 407
Target Start/End: Complemental strand, 6955358 - 6954954
Alignment:
| Q |
3 |
atatattctccatgtactactatcaaatcttgcaggtttgcaaaaaagactaatcttagatgcaatatagtaagtatttttcttaccattcctctcacaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6955358 |
atatattctccatgtactactatcaaatcttgcaggtttgcaaaaaagactagtcttagatgcaatatagtaagtatttttcttaccattcctctcacaa |
6955259 |
T |
|
| Q |
103 |
aagaacgttttttcacacccttaagttattggcaatagttataccacctttttagtagagaatagtaagaataatgtctacaacattgtatttgtaccta |
202 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6955258 |
aagatcgttttttcacaccctcaagttattggcaatagttataccacctttttagtagagaatagtaagaataatgtctacaacattgtatttgtaccta |
6955159 |
T |
|
| Q |
203 |
agttttatccttacaatttaaaatgaagaaagatacagtgcacataatacatacctgttctataattggaagatatccaccaacatttggaagtatggta |
302 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6955158 |
agtttcatccttacaatttaaaatgaagaaagatacagtgcacataatacatacctgttctataattggaagatatccaccaacattaggaagtatggta |
6955059 |
T |
|
| Q |
303 |
ccatttgggagtattccaccttcacctcccactccaacagcaatgtcatctctccccatcatgtaaagtatgtcatatacttgattcactgcatgaccac |
402 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6955058 |
ccatttgggagaattccaccttcacctcccactccaacagcaatgtcatctctccccatcatgtaaagtatgtcatatacttgattcactgcatgcccag |
6954959 |
T |
|
| Q |
403 |
cattt |
407 |
Q |
| |
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||||| |
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| T |
6954958 |
cattt |
6954954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 298 - 407
Target Start/End: Complemental strand, 6964791 - 6964682
Alignment:
| Q |
298 |
tggtaccatttgggagtattccaccttcacctcccactccaacagcaatgtcatctctccccatcatgtaaagtatgtcatatacttgattcactgcatg |
397 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6964791 |
tggtaccatttgggagaattccaccttcacctcccactccaacagcaatgtcatctctccccatcatgtaaagtatgtcatatacttgattcactgcatg |
6964692 |
T |
|
| Q |
398 |
accaccattt |
407 |
Q |
| |
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||| ||||| |
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| T |
6964691 |
cccagcattt |
6964682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 6965232 - 6965185
Alignment:
| Q |
253 |
atacctgttctataattggaagatatccaccaacatttggaagtatgg |
300 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
6965232 |
atacctgttcaatgattggaagatatccaccaacatttggaagtatgg |
6965185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 254 - 379
Target Start/End: Original strand, 49104939 - 49105064
Alignment:
| Q |
254 |
tacctgttctataattggaagatatccaccaacatttggaagtatggtaccatttgggagtattccaccttcacctcccactccaacagcaatgtcatct |
353 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| |||||||||||||| |||||| |
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| T |
49104939 |
tacctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatct |
49105038 |
T |
|
| Q |
354 |
ctccccatcatgtaaagtatgtcata |
379 |
Q |
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||||||||||||||||||| |||||| |
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| T |
49105039 |
ctccccatcatgtaaagtaagtcata |
49105064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 397
Target Start/End: Original strand, 18133629 - 18133771
Alignment:
| Q |
255 |
acctgttctataattggaagatatccaccaacatttggaagtatggtaccatttgggagtattccaccttcacctcccactccaacagcaatgtcatctc |
354 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| || | ||||||||||| ||||||| |
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| T |
18133629 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctcaccaccaattccaacagcaacatcatctc |
18133728 |
T |
|
| Q |
355 |
tccccatcatgtaaagtatgtcatatacttgattcactgcatg |
397 |
Q |
| |
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||||||||||||| || | |||||| | ||| ||||| ||||| |
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| T |
18133729 |
tccccatcatgtacagcaagtcataaatttggttcacagcatg |
18133771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 397
Target Start/End: Original strand, 49120839 - 49120981
Alignment:
| Q |
255 |
acctgttctataattggaagatatccaccaacatttggaagtatggtaccatttgggagtattccaccttcacctcccactccaacagcaatgtcatctc |
354 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| || | ||||||||||| ||||||| |
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| T |
49120839 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctcaccaccaattccaacagcaacatcatctc |
49120938 |
T |
|
| Q |
355 |
tccccatcatgtaaagtatgtcatatacttgattcactgcatg |
397 |
Q |
| |
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||||||||||||| || | |||||| | ||| ||||| ||||| |
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| T |
49120939 |
tccccatcatgtacagcaagtcataaatttggttcacagcatg |
49120981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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