View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18053_high_14 (Length: 411)

Name: NF18053_high_14
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18053_high_14
NF18053_high_14
[»] chr1 (5 HSPs)
chr1 (4-272)||(1930686-1930953)
chr1 (4-116)||(1937411-1937523)
chr1 (109-272)||(1937208-1937360)
chr1 (165-263)||(28552432-28552529)
chr1 (346-387)||(1922863-1922904)
[»] chr6 (1 HSPs)
chr6 (177-272)||(11661047-11661141)
[»] chr5 (1 HSPs)
chr5 (182-267)||(36954503-36954587)
[»] chr3 (1 HSPs)
chr3 (177-236)||(3821001-3821059)
[»] chr4 (2 HSPs)
chr4 (184-261)||(16291815-16291891)
chr4 (327-355)||(54029552-54029580)
[»] chr7 (2 HSPs)
chr7 (177-261)||(47113209-47113292)
chr7 (319-355)||(47255117-47255153)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 1930953 - 1930686
Alignment:
Q  4 aatattgtgatgtatatgagatgttctcttccaacttgattatatgtgagatgataaattattgatttaattaatttatttcggtataaatgcattttta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1930953 aatattgtgatgtatatgagatgttctcttccaacttgattatatgtgagatgataaattattgatttaattaatttattttggtataaatgcattttta 1930854  T
Q  104 accttttaactttacaaaacgttgcaaaattgtttagaagacgtcatgaaataaaaatgtttctcaaaataggggggtcaaaatcgcaacattttgtaaa 203  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1930853 acctcttaactttacaaaacgttgcaaaattgtttagaagacgtcatgaaataaaaatgtttctcaaaatag-ggggtcaaaatcgcaacattttgtaaa 1930755  T
Q  204 gataaagggggcaacatagcatatttccctaaagatatagggctaaaggaacatattttcgtattgata 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1930754 gataaagggggcaacatagcatatttccctaaagatatagggctaaaggaacatattttcgtatagata 1930686  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 1937523 - 1937411
Alignment:
Q  4 aatattgtgatgtatatgagatgttctcttccaacttgattatatgtgagatgataaattattgatttaattaatttatttcggtataaatgcattttta 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  1937523 aatattgtgaggtatatgagatgttctcttccaacttgattatatgcgagatgataaattattgatttaattaatttatttaggtttaaatgcattttta 1937424  T
Q  104 accttttaacttt 116  Q
    |||| ||| ||||    
T  1937423 acctcttatcttt 1937411  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 272
Target Start/End: Complemental strand, 1937360 - 1937208
Alignment:
Q  109 ttaactttacaaaacgttgcaaaattgtttagaagacgtcatgaaataaaaatgtttctcaaaataggggggtcaaaatcgcaacattttgtaaagataa 208  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||         |||| || ||||||||||| ||||||||||||||||||||||| ||||    
T  1937360 ttaactttacaaaacgttgcaaaactgtatagaagacgccatg---------tgttcct-aaaataggggg-tcaaaatcgcaacattttgtaaatataa 1937272  T
Q  209 agggggcaacatagcatatttccctaaagatatagggctaaaggaacatattttcgtattgata 272  Q
    |||||| || | | |||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  1937271 agggggtaaaagatcatatttccctaaagatatagggctaaaagaacatattttcatatagata 1937208  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 28552432 - 28552529
Alignment:
Q  165 tctcaaaataggggggtcaaaatcgcaacattttgtaaagataaagggggcaacatagcatatttccctaaagatatagggctaaaggaacatattttc 263  Q
    |||||||||||||||| |||||| ||||| |||||||||||| || ||| ||| | ||| |||||||||||||||| |||| |||| || |||||||||    
T  28552432 tctcaaaataggggggccaaaattgcaactttttgtaaagattaa-gggtcaaaagagcttatttccctaaagatagagggttaaaagagcatattttc 28552529  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 387
Target Start/End: Complemental strand, 1922904 - 1922863
Alignment:
Q  346 gctcacgggacgatagttacatatgtttgaaatatgaaatgt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1922904 gctcacgggacgatagttacatatgtttgaaatatgaaatgt 1922863  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 11661047 - 11661141
Alignment:
Q  177 ggggtcaaaatcgcaacattttgtaaagataaagggggcaacatagcatatttccctaaagatatagggctaaaggaacatattttcgtattgata 272  Q
    |||| |||||||||||| |||||||||||| ||||||| || | ||||||||||| |||||||| |||| || | |||||||||| | ||||||||    
T  11661047 ggggccaaaatcgcaactttttgtaaagat-aagggggaaaaagagcatatttccttaaagatagaggggtacaagaacatatttccctattgata 11661141  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 36954503 - 36954587
Alignment:
Q  182 caaaatcgcaacattttgtaaagataaagggggcaacat-agcatatttccctaaagatatagggctaaaggaacatattttcgtat 267  Q
    |||||| ||||| ||||||||||||||||||   || || ||||||||||| ||||||||||||| |||| ||||||||| ||||||    
T  36954503 caaaattgcaactttttgtaaagataaagggt--aaaatgagcatatttccttaaagatatagggttaaaagaacatattctcgtat 36954587  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 3821059 - 3821001
Alignment:
Q  177 ggggtcaaaatcgcaacattttgtaaagataaagggggcaacatagcatatttccctaaa 236  Q
    ||||||| ||||||||| ||||||||||||||| ||| ||| | ||||||||||||||||    
T  3821059 ggggtcataatcgcaactttttgtaaagataaa-gggtcaaaagagcatatttccctaaa 3821001  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 16291815 - 16291891
Alignment:
Q  184 aaatcgcaacattttgtaaagataaagggggcaacatagcatatttccctaaagatatagggctaaaggaacatattt 261  Q
    ||||| |||| |||||||||||||| |||| ||| | | | |||||||||||||||| ||||||||| || |||||||    
T  16291815 aaatcacaactttttgtaaagataa-ggggacaaaagatcttatttccctaaagatagagggctaaaagagcatattt 16291891  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 355
Target Start/End: Complemental strand, 54029580 - 54029552
Alignment:
Q  327 tctctgccaactgaattaagctcacggga 355  Q
    |||||||||||||||||||||||||||||    
T  54029580 tctctgccaactgaattaagctcacggga 54029552  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 47113292 - 47113209
Alignment:
Q  177 ggggtcaaaatcgcaacattttgtaaagataaagggggcaacatagcatatttccctaaagatatagggctaaaggaacatattt 261  Q
    |||| |||||||||||| |||| |||||||||||||  ||| | | | |||||||||||||||| ||||| ||| || |||||||    
T  47113292 ggggccaaaatcgcaactttttataaagataaagggc-caaaagatcttatttccctaaagatagagggccaaaagagcatattt 47113209  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 47255117 - 47255153
Alignment:
Q  319 atgcaatgtctctgccaactgaattaagctcacggga 355  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  47255117 atgcaatatctctgccaactgagttaagctcacggga 47255153  T

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